Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq312 116 4e-21 seq63 116 4e-21 seq1 91.5 2e-13 >seq312 Length=4428592 Score = 116 bits (128), Expect = 4e-21 Identities = 357/542 (66%), Gaps = 14/542 (3%) Strand=Plus/Plus Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 |||||||||||| ||| || || || ||||||||| | || ||||||| || || Sbjct 261027 TTTCTTGAGCCAGAATGACGACACAGAAAAACCAGAAAAGGAGATCTCTTCCACAGCAGC 261086 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288 || ||||||| ||||| || | || || | ||||| | | ||||| Sbjct 261087 AAG-GCCACAACCCGTTCCCCATTGGTAGCCTCTTTGTCCCCAATCCAATGCGAGGCCCA 261145 Query 93289 ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTC 93348 ||| || | ||||| |||||| | || || || || || || || | || | || Sbjct 261146 ATCTGCCTCCTTCTTCCCACAAGGCATCGTGTCAATGGCATTGAAGAGAAATTCCCCTTC 261205 Query 93349 GTCCGAATCTCGTATGTATGTATCGA---TTAACAGAGAATACATTTCAGA-ATGGACAT 93404 | |||| || ||| || || | ||| | || ||| | || ||| | | Sbjct 261206 TTTGGAAT---GTTTGTCGGTGAGGAGACTGCACATCGCATCCATG-CTGAGATGTATGT 261261 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 | ||| | ||||||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct 261262 TGTCCGTGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGC 261321 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 ||| | ||| || | |||||||| ||||| ||||| ||| ||| | ||||||| | Sbjct 261322 TAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCCGCAGAGAAAGCCAGAA 261381 Query 93525 TATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA-ATCGGATAGATCTTTT 93583 ||| |||||||| |||| ||| | | | ||||| | || | || || Sbjct 261382 CATGGCATATAAAATAGCCCTCA--GGCTTCAGGGAT-TCCCAGCGCCGA-ATGTCCTTG 261437 Query 93584 GAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCAT 93643 |||||||| || ||||| | |||||||| || || || ||||| || | ||| | ||| Sbjct 261438 GAAAGATCCACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCAA 261497 Query 93644 ATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGC 93703 | || || | | || || ||||| || | || |||||| ||| | ||| ||| Sbjct 261498 AGATCGTGGTCCTCGGCAGGGAAGATGACGAAGCCATGAGGGTTTTCTCTCAGTGGGGGC 261557 Query 93704 TC 93705 || Sbjct 261558 TC 261559 >seq63 Length=14173813 Score = 116 bits (128), Expect = 4e-21 Identities = 193/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| || || | | ||| |||| | ||| |||||||| ||||| || || ||| Sbjct 113617 GGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCT 113558 Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 | || || || | ||||| ||||| | || || | ||| || || ||||||| ||| Sbjct 113557 C-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCACGATTCTTGAACCA 113499 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| || |||||| ||||||||| || || |||||||| | ||||| ||||||| Sbjct 113498 GAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGTGGCAAAGGCCACAAC 113439 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 ||||| || | | || || | ||||| ||||||||||| || || || Sbjct 113438 CCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAAAGCCCAATCTGCCTTCTT 113379 Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 ||| | |||||| | ||| ||||| || || || || Sbjct 113378 CTTTACACAAGGCATTGTCTCGATGGCATTGAAGAG 113343 >seq1 Length=9663177 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| ||||| || ||| Sbjct 2450241 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATATCGACGCA 2450300 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| ||||||| ||||| Sbjct 2450301 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCCACAACCCGTTC 2450353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| |||||||| || || | ||| ||||| |||||||||| || ||||| Sbjct 2452248 GAATCTTTAATGTATGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATG 2452307 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 2452308 GCAATTTGGAAGCCATAGAAACACCGGGCTTCTGTAATCTGAACTTCTTG 2452357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556695001657560