Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq77 104 2e-17 seq48 91.5 1e-13 >seq77 Length=12846609 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||||||||| |||| || || ||||| ||| Sbjct 3756260 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAAACCATCACCCTGGAGGTGGAGCCCAGT 3756319 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || ||||| || Sbjct 3756320 GACACCATTGAAAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 3756379 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | || ||| |||||| | || || |||||| Sbjct 3756380 CAGAGATTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 3756439 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 3756440 ATCCAGAAGGAGTCCAC 3756456 >seq48 Length=2952444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 2403330 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 2403389 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| |||||| | || || | || || || ||||| || ||||| || || || Sbjct 2403390 CCCAGTGATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCT 2403449 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 2403450 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 2403509 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || ||||| || || Sbjct 2403510 TACAACATCCAGAAAGAGTCGAC 2403532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || ||||| ||| Sbjct 2403564 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2403623 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||| || ||||| || || || || || Sbjct 2403624 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 2403683 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | || ||| |||||| | || ||||||||| Sbjct 2403684 CAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2403743 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 2403744 ATCCAGAAAGAGTCAACC 2403761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 2403792 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2403851 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||| || ||||| || || || || || Sbjct 2403852 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 2403911 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | || ||| |||||| | || ||||||||| Sbjct 2403912 CAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2403971 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||| || ||| | ||| | || |||| Sbjct 2403972 ATTCAGAAAGAGTCGACCCTGCATCTGGTCCTGCG 2404006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419606155453735