Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq77 185 2e-41 seq48 154 3e-32 seq23683 102 2e-16 seq275 86.0 1e-11 >seq77 Length=12846609 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || |||||||| || |||||||| || || || Sbjct 3757398 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3757339 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||| |||||||| || || | || || |||||||| || Sbjct 3757338 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3757279 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| |||||||| |||||||||||| | || || Sbjct 3757278 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 3757219 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || |||||||| ||||| |||||||| Sbjct 3757218 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3757172 Score = 181 bits (200), Expect = 2e-40 Identities = 173/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 3757161 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 3757102 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || | || || |||||||| || ||||||||| Sbjct 3757101 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCC 3757042 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| |||||||| |||||||||||| ||| | || || |||| ||| Sbjct 3757041 TTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 3756983 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| ||||| |||||||| Sbjct 3756982 GATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3756944 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 3756933 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 3756874 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || | || || |||||||| || ||||||||| Sbjct 3756873 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCC 3756814 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| |||||||||||| | || || |||| |||| Sbjct 3756813 TTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 3756754 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 3756753 ATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756716 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 3756477 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 3756418 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| ||||| || || || | ||| || |||||||| || ||||| ||| Sbjct 3756417 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCC 3756358 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| || |||||||| | || || |||| |||| Sbjct 3756357 TTGTCCTGGATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 3756298 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || || | |||||| ||||| ||||||||| Sbjct 3756297 ATGGTTTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 3756259 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || | | Sbjct 3756705 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGGGGGC 3756646 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || | || || |||||||| || ||||||||| Sbjct 3756645 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCC 3756586 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| |||||||||||| | || || |||| |||| Sbjct 3756585 TTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 3756526 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 3756525 ATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756488 >seq48 Length=2952444 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| || || || |||||||| || ||||| ||||| || || || | Sbjct 2404009 AGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGG 2403950 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || ||||| || || ||||| || Sbjct 2403949 CCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 2403890 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||| || ||||||||||| | || || |||| |||| Sbjct 2403889 TTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 2403830 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 2403829 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2403792 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 2404228 ACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCC 2404169 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || || || || ||||| || || ||||| || || ||||| Sbjct 2404168 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 2404109 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||||||||||| | || || |||| ||||||||| || Sbjct 2404108 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2404049 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 2404048 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2404020 >seq23683 Length=3212679 Score = 102 bits (112), Expect = 2e-16 Identities = 157/218 (72%), Gaps = 21/218 (10%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||| || || || |||| || | ||||| || Sbjct 2858765 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGA--GTTCAGCCATCCTCC 2858708 Query 68313 AACTG-CTTCCCG-GCGAAT---ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGT 68367 | ||| || |||| ||||| |||| || ||||| ||||| ||||| |||| || Sbjct 2858707 AGCTGTCTGCCCGTACGAATCAGATGA-----TGCTGGTCAGGTGGGATGCCCTCCTGGT 2858653 Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC----TGCTGATTCTACTTCCAAGGTG 68423 |||| || || || ||||| |||| ||||||| ||| | || |||| | || Sbjct 2858652 CTTGGATTTTGGCTTTGACATCCTCAGTGGTGTCACTGGGCTCAGTC----TCCAGGATG 2858597 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||| | |||||||| || || |||| ||| Sbjct 2858596 ATGGTCTTGCCC-TCAGGGTCTTCACAAAGATCTTCAT 2858560 >seq275 Length=1265343 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 84446 TGACGAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGT 84505 ||| || ||||||||| |||||||||||| ||||| || ||||||| || |||||| Sbjct 1226751 TGAGGACAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 1226810 Query 84506 GGGTTCGAGCCCCACATCGGGC 84527 ||||||||||||||| | |||| Sbjct 1226811 GGGTTCGAGCCCCACGTTGGGC 1226832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921347998450680