Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq63 127 4e-24 >seq63 Length=14173813 Score = 127 bits (140), Expect = 4e-24 Identities = 245/359 (68%), Gaps = 7/359 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| ||||| ||||| || | ||||||||||| || ||||| | Sbjct 113343 CTCTTCAATGCCATCGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCTTTGCGT 113402 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| | | || || || | || || || | || |||||| || | || || Sbjct 113403 TGGATTGGGGACAAAGAGGCTACCTATGGAGAACGGGTTGTGGCCTTTGCCACTGTGGAA 113462 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GA 42786 || |||||||| || || | || || || || |||||| ||||| | ||| | || Sbjct 113463 GGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCTGGTTCAAGAATC--GTGGCCTGA 113520 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || ||||| || || || ||||| || ||||| || ||||| | || | |||| Sbjct 113521 TGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGGCTTACACTGTGACT 113580 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGG 42906 |||||||||| ||||| | ||||| || || || || || || | || ||| Sbjct 113581 TTGCCTGCCTGATGTTC---AAACACCTGGTCCATAAACCTTCTGAGCAGAGAGTGAGGG 113637 Query 42907 CCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 ||||| | | ||| | ||||| || |||| ||||||| | || | |||||||| Sbjct 113638 AAATCATTATCAATGCCATTCAGATCTAGCAGGAATTCCTCATGGAGGCCTTGCCCGTG 113696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944058034807440