Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq48 140 3e-28 seq77 113 5e-20 seq62 86.0 6e-12 >seq48 Length=2952444 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 2403532 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2403473 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 2403472 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 2403413 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||||| || ||||| || | || | |||||||||||||| || Sbjct 2403412 ACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2403353 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 2403352 TTCACGAAGATCTGCATTTT 2403333 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| ||||| |||||||||||||| | | ||||| | ||| Sbjct 2404003 AGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 2403944 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | ||||||| ||||||||| || || || || ||||| ||| Sbjct 2403943 TCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 2403884 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || ||||| || | || | |||| Sbjct 2403883 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2403824 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 2403823 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2403792 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | || || | ||||| ||||||||||| Sbjct 2404216 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCA 2404157 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| |||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 2404156 GCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 2404097 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 2404096 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2404037 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 2404036 TTCACGAAGATCTGCAT 2404020 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| | ||||| |||||||| || Sbjct 2403760 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCA 2403701 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| ||||| || || ||| Sbjct 2403700 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 2403641 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||||| || ||||| || | || | |||||||||||||| || Sbjct 2403640 ACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2403581 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 2403580 TTCACAAAGATCTGCAT 2403564 >seq77 Length=12846609 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 3756912 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 3756853 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || |||||||||||| || || ||||| || || || || || ||| Sbjct 3756852 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3756793 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||| || ||||| || Sbjct 3756792 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTC 3756733 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 3756732 TTCACGAAGATCTGCAT 3756716 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 3757368 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 3757309 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || |||||||||||| || || ||||| || || || || || ||| Sbjct 3757308 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3757249 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||| ||||||| || Sbjct 3757248 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 3757189 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 3757188 TTCACGAAGATCTGCAT 3757172 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 3757140 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 3757081 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || |||||||||||| || || ||||| || || || || || ||| Sbjct 3757080 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3757021 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| || | || | |||||| ||||||| || Sbjct 3757020 ACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 3756961 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 3756960 TTCACGAAGATCTGCAT 3756944 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | || | || | ||||| ||||| || ||| Sbjct 3756684 GTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGGGGGCCCATCTTCCAGCTGTTTCCCG 3756625 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || |||||||||||| || || ||||| || || || || || ||| Sbjct 3756624 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3756565 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||| || ||||| || Sbjct 3756564 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTC 3756505 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 3756504 TTCACGAAGATCTGCAT 3756488 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | ||||| ||||| || || Sbjct 3756456 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCA 3756397 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | |||||||||||| || || || || || || || || || ||| Sbjct 3756396 GCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 3756337 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||| || |||||||| || Sbjct 3756336 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTACCGGTCAAGGTC 3756277 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 3756276 TTCACGAAGATCTGCATT 3756259 >seq62 Length=55877296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||| |||| || || ||||| || | | || | | ||||| |||| |||| | Sbjct 11741733 GTTGATACTTTCTGGATATTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTCCTTGTCT 11741674 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||| | || || || |||||||| || || | || ||| Sbjct 11741673 GCAAAGATGAGCCTCTGCTGGCCAGGGGGTATGCCTTCTTTATCCTGGGTCTTGGCCTTC 11741614 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || || ||||| | || |||| || | || | |||||||||||||| || Sbjct 11741613 ACATTCTTCATGGTATCTCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 11741554 Query 64427 TTTACGAAAATTTGCATTTT 64446 || | ||| | |||||||| Sbjct 11741553 TTCATGAAGACCTGCATTTT 11741534 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| ||||||||||| ||| | ||||||| ||||||||| || | || |||||||| Sbjct 47108487 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGTGATGCCTTCTTTA 47108546 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| || | || | || || ||||| || | || | Sbjct 47108547 TCTTGGATCTTAGCCTTCACATTCTTGATGGTGTTACTGGGTTCCACCTCCAGAGCGATA 47108606 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| | ||| || || || || || ||||| Sbjct 47108607 GTCTTGCTGATCAGGGTCTTCACAAAGATCTGCAT 47108641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499496037006360