Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq14 159 5e-34 seq151 109 8e-19 >seq14 Length=22407316 Score = 159 bits (176), Expect = 5e-34 Identities = 216/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | |||||| | || ||||| ||||||||||| || || || ||| |||| | Sbjct 20343588 AACACTGAACGCAGTAAAAGGACAGCCCTTCACATTATTGCAGATAAGAGACCGAATTGA 20343529 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || ||||| || || || || ||||| || |||||||| | Sbjct 20343528 GGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 20343469 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || |||||| || |||| || |||||||||||||| || || |||| || | Sbjct 20343468 AGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAAAAGGGTGCTCCCATTTCTAC 20343409 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 || ||||||| ||||||||| | ||||| || ||||| || | || | ||| || || Sbjct 20343408 CATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCAGGATACAG 20343349 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | || ||||| ||||| || ||| | ||||| || |||||||| || Sbjct 20343348 CTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTCC 20343289 Query 9175 T 9175 | Sbjct 20343288 T 20343288 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| || |||||| ||| ||| | || Sbjct 20340979 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 20340920 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 20340919 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 20340860 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 20340859 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 20340803 Score = 114 bits (126), Expect = 2e-20 Identities = 198/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| ||||| || || |||| | ||| || | | | || Sbjct 20342605 CCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGTCCATGTTCCAGCAATATA 20342546 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || |||| | || |||| | ||| |||| | || ||| Sbjct 20342545 GAGTTGTTGTAGACAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 20342486 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 || | || | ||||||| ||||||| || || ||||| || || || ||||| |||||| Sbjct 20342485 GGTAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAC 20342426 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | |||| |||||| || || | Sbjct 20342425 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTGATAACCAC 20342368 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| ||||| | | || | ||| ||||||||||| || Sbjct 20342367 TCAAGTGCTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 20342322 Score = 113 bits (124), Expect = 7e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| || || || || |||| ||| ||| Sbjct 20340370 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 20340311 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| ||||| ||||||||||| || |||||||| || | |||||| Sbjct 20340310 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 20340251 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | ||||| ||| Sbjct 20340250 GGTGGACTCTCAATCAAATGTGACCTCGCT 20340221 >seq151 Length=15485885 Score = 109 bits (120), Expect = 8e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || ||||| ||||| || ||||||||| | || ||||||||| ||| | | ||| Sbjct 8741430 TCACCACCGAATGTGCTTGGCTTCCAGTACTCTGGAGAGCAGATGGGATTCCCTAGGAGG 8741489 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | |||||| |||||||| | || || || ||||| || ||||||| || Sbjct 8741490 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAGTTTGGG 8741549 Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || || | || | |||| | ||||| || | || |||| ||| ||||| || Sbjct 8741550 TGGCACTTCTCCA-GAAGCAGCCCCGGGTAGAACTCCAAGGCATCGATGTCTCCATACAG 8741608 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||||||||||| || ||||||||||| ||| Sbjct 8741609 CTCTTCCAACTCGGCTGCAATCTCCTTCTCCCCT 8741642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723512519034600