Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq77 131 2e-25 seq48 129 6e-25 seq49 87.8 2e-12 >seq77 Length=12846609 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || ||| ||| Sbjct 3757172 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 3757231 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || ||| ||||||| Sbjct 3757232 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 3757291 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 3757292 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 3757351 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| ||||| ||||| ||||| || || Sbjct 3757352 ATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 3757398 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || |||||||||||| | || || ||| ||| Sbjct 3756259 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAAACCATCACCCTGGAGGTGGAGCCCAG 3756318 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 3756319 TGACACCATTGAAAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 3756378 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 3756379 GCAGAGATTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 3756438 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||| || || | || || ||| Sbjct 3756439 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 3756487 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || ||| ||| | Sbjct 3756944 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 3757003 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || ||| ||||||| Sbjct 3757004 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 3757063 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 3757064 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 3757123 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || || | || || ||| Sbjct 3757124 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 3757171 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| Sbjct 3756716 ATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 3756775 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || ||| ||||||| Sbjct 3756776 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 3756835 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 3756836 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 3756895 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || || | || || ||| Sbjct 3756896 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 3756943 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || || ||| ||| Sbjct 3756488 ATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 3756547 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || ||| ||||||| Sbjct 3756548 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 3756607 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | || | |||| ||||||||| Sbjct 3756608 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCCCCCCCTATCTGACTACAAC 3756667 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || || | || || ||| Sbjct 3756668 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGC 3756715 >seq48 Length=2952444 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 2403333 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 2403392 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | || | || |||| || |||||||| || ||| | ||| Sbjct 2403393 AGTGATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGAC 2403452 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || || ||| Sbjct 2403453 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 2403512 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || |||| || || |||| ||||| ||||||| ||| Sbjct 2403513 AACATCCAGAAAGAGTCGACTCTCCACCTGGTCCTGCGCCTGAGAGGTGGC 2403563 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2404020 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2404079 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| || |||||||| || ||| | ||||| Sbjct 2404080 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 2404139 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| || ||||| |||||||| || | || || || || |||||| Sbjct 2404140 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGATTACAAC 2404199 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| || || |||| || ||| |||| || ||| Sbjct 2404200 ATCCAGAAAGAGTCGACTCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 2404247 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2403564 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2403623 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | || |||| || |||||||| || ||| | ||||| Sbjct 2403624 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 2403683 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || || || |||||||| || | ||||| || || |||||| Sbjct 2403684 CAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2403743 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| |||| ||||| ||||||| ||| Sbjct 2403744 ATCCAGAAAGAGTCAACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 2403791 >seq49 Length=13345899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC---GTGCAAACGCTTAAAGAA 38327 ||||| ||| ||| |||| |||||| ||| ||| | | | ||| |||||| Sbjct 7319081 GGCAAGACCGTCATTCTCGAGGTCGAGTCCAGTGACGCCACTGAGAAAA---TTAAAGCC 7319025 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| | |||| ||||| || || |||||| |||| ||||||| ||||| ||| Sbjct 7319024 AAAATCCACAACAAGGAGGGCATCCCGCCCGACCCGCAGCATCTCATTTTTGCGGGTAAA 7318965 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||| ||| |||||| | || || || || || || ||| | Sbjct 7318964 CAGCTGGAGGAGGGCCGCATTCTCTCAGACTACCATATTCAGAAAGAGGCCACCCTGTAC 7318905 Query 38448 TTGGTGCT 38455 |||| ||| Sbjct 7318904 TTGGAGCT 7318897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500023879800960