Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22337 176 2e-38 seq151 109 2e-18 seq103 84.2 9e-11 >seq22337 Length=1224896 Score = 176 bits (194), Expect = 2e-38 Identities = 356/526 (68%), Gaps = 7/526 (1%) Strand=Plus/Plus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | |||||| | | || | ||||| | Sbjct 950904 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCT 950963 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 |||||| ||| | ||| | | ||| | | ||| | ||| || ||| || ||| Sbjct 950964 GTAGTACAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAACCC 951023 Query 451202 TA--TATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCAT 451259 | || | || | || ||||| || | ||| |||| |||||| ||||| || | Sbjct 951024 AAGGTAATGGTGTCA--TACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTT 951081 Query 451260 CTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTG 451319 ||||||| || || || ||||| || || || || | | | || || ||||| Sbjct 951082 CTATGGTACTGACAAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTTACCA 951141 Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || ||||| || || |||||||||||| | ||||| || || || || |||| Sbjct 951142 ATGCCGTGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATG 951201 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| ||||| ||| | ||||| || ||||||| |||||||| ||||| ||||| Sbjct 951202 CAGGTGTGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCA 951261 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | |||||||| ||| ||| | || | ||| | | | || | |||||| Sbjct 951262 TTGCATATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACACGTCTTGATCTTTGATC 951318 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | |||||||| || |||| || | || | || || ||||| | ||||| |||| Sbjct 951319 TAGGTGGAGGCACATTTGATGTGTCCATCCTGACCATAGATGATGGAATTTTTGAGGTAA 951378 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||| || || || || || || ||||| ||||| ||||||| Sbjct 951379 AGGCCACAGCCGGGGACACCCACCTGGGAGGGGAAGACTTTGATAA 951424 >seq151 Length=15485885 Score = 109 bits (120), Expect = 2e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 6283460 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 6283519 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||||||| ||||||||| || |||||| | | || |||||||| || Sbjct 6283520 AAAGATGCAGGAACTATTGCTGGATTGAATGTTATGAGGATCATTAATGAGCC 6283572 >seq103 Length=31278376 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||||| Sbjct 25738274 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTAATTAATGAACCC 25738333 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| ||||| |||| Sbjct 25738334 ACAGCTGCTGCTCTGGCCTATGGTCTAGACAAATCGGAAGA 25738374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975115448406452