Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq94 136 3e-26 seq151 95.1 9e-14 seq8 95.1 9e-14 seq53 89.7 4e-12 >seq94 Length=18745391 Score = 136 bits (150), Expect = 3e-26 Identities = 364/550 (66%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| || |||||||| |||||||| || | | | ||| |||| ||| || |||||| Sbjct 852036 GCACCGTAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 851977 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| | ||||||| ||| | ||| || ||||| | || || || || | ||||| Sbjct 851976 AAATCTTGTAGAAGTT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 851918 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 || || | ||| || || || || || | |||| | |||| || || || || || Sbjct 851917 ATCGTGGATCTGAGACTTGTCTAGCTTAGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 851858 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | |||| ||| | | | |||||| || || | ||||| || | || Sbjct 851857 GGTGCCACGGAACAGGTCAGCATTTAATTCTTCAAAGCGGGCACGAGTAATAGAGGTATA 851798 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || |||||||| ||| |||||||| ||||| | | || || ||||| || Sbjct 851797 GAAGTCGATTCCTTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 851738 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGA 517966 || ||| |||||||||||||| || || | || | || | || | ||| | || | Sbjct 851737 TGTACGCTTAGCACGTTCACAAGCAGTACGGAGACGACGAACTGCCCTCTTGTT--TTCA 851680 Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGAT 518024 | | || | |||| ||| | ||||| ||| ||| | | ||| | || | || | Sbjct 851679 CTGATGTCCTTCTTATGTTTGCGTTTGAACTCTGCAATAAA--ATGGTTGACCATTCGGT 851622 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 ||||||| ||||| || || || | || | ||| | || | | | || | ||| | || Sbjct 851621 TATCAAAGTCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTGGATTTGACCTCGAAGATTC 851562 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 ||||||||| || | | || |||||| || ||||| || | ||||| || || | Sbjct 851561 CATCTTCAATAGTAAGGATAGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAGCA 851502 Query 518145 CATTCATTTC 518154 ||||| |||| Sbjct 851501 CATTCCTTTC 851492 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 851381 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 851322 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 851321 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 851262 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || | ||| |||| Sbjct 851261 GCAGGTACTGTGACAACTGCAT 851240 >seq151 Length=15485885 Score = 95.1 bits (104), Expect = 9e-14 Identities = 210/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Minus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155 |||| ||||||||| ||| ||||| || ||| || ||| || ||| | || |||| Sbjct 6285616 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 6285559 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212 | | ||| || ||| ||| || ||||| | |||||| | | |||||| Sbjct 6285558 CTTCTCAGCATCATTAACCATCCTTTCAATCT---CTTCAGG---TGTCAGGCGATTTTG 6285505 Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266 ||| ||||| ||||| || || |||||| ||| ||| || | || ||||| Sbjct 6285504 GTCATTCGTAATTGTAATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 6285448 Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 6285447 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 6285388 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 |||||| || || || || || ||| ||||||||| | ||| ||||| || | Sbjct 6285387 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTTGTCAGGGG 6285328 Query 517387 TCGTTCACC 517395 ||||||||| Sbjct 6285327 TCGTTCACC 6285319 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || |||||||| || |||| |||||| | |||||||| ||||||||||||| || || Sbjct 6283572 GGCTCATTAATGATCCTCATAACATTCAATCCAGCAATAGTTCCTGCATCTTTGGTTGCC 6283513 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | ||| | ||| || ||||| || || ||||||| ||| |||| Sbjct 6283512 TGGCGTTGGGCATCATTGAAATAGGCTGGTACAGTAACAACTGCAT 6283467 >seq8 Length=1929094 Score = 95.1 bits (104), Expect = 9e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| || ||||| ||||||||||| || ||| | || || ||| | Sbjct 1351705 TGTACACTCATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 1351646 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | || || ||||||||||||||||||||| | | |||||| | Sbjct 1351645 GTGGTTGGGAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 1351586 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 1351585 GAAGCTTCTCATAAA 1351571 >seq53 Length=2915887 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 27455 TGTCGTAGCTACCATAGCTTTTGGAATGGGGATTAATAAAGCTGACATTCGCAAAGTCAT 27396 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || || || || ||||| || || Sbjct 27395 TCATTATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATCGGGAGAGCTGGCCG 27336 Query 367113 TGATGGA 367119 ||||||| Sbjct 27335 TGATGGA 27329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779640422760214