Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq63 82.4 9e-11 seq1 82.4 9e-11 >seq63 Length=14173813 Score = 82.4 bits (90), Expect = 9e-11 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| | |||||||||| | |||||||||||| || || ||||| Sbjct 113585 GGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCC 113526 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||| || || || ||||| ||||| | || | |||| || || || || ||||||| Sbjct 113525 AGGCATCAGGCCACGATTCTTGAACCAGAATATCGACGCA-AAAGAACCAGAAAAGAAGA 113467 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTTGT-GTC 117449 | || |||||| ||||| || | || || || | ||| ||| |||||| | Sbjct 113466 TTCCTTCCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGC--CTCTTTGTCCCC 113409 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || ||| || ||||| | |||||||||| | ||| || | || | |||||| Sbjct 113408 AATCCAACGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGC 113352 >seq1 Length=9663177 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||||||||||||||| |||||||| || || ||| || ||||| Sbjct 2449087 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCAT 2449146 Query 117045 AAAGTCAAATGGATT 117059 ||||||||||||||| Sbjct 2449147 AAAGTCAAATGGATT 2449161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589805140591560