Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq116 84.2 2e-11 >seq116 Length=5532532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 1336170 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTGTCCAGAAGGCACCACCACAGCTG 1336111 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || || |||||||| || || ||||| ||||| || || | | | Sbjct 1336110 CCCACTTCTGGAAGGTCCCATCTCCTGCAGGCCTGGTCTCCACAAGCTCCGTGTCCTGGG 1336051 Query 469 TCAGTTGCTCTGC-TCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGC-CAGT 526 ||| | ||| | || || |||||| || | ||| || |||||||| ||||||| ||| Sbjct 1336050 GCAGGTCCTCCCCATCACA-GTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCTCAG- 1335993 Query 527 GGCCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||||| || | || || || | | |||||| Sbjct 1335992 GGCCCAGCACCTCAGGGTGACATCATGGTCAG 1335961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397631736349464