Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq63 266 4e-66 seq81 127 2e-24 seq1 109 6e-19 seq268 107 2e-18 >seq63 Length=14173813 Score = 266 bits (294), Expect = 4e-66 Identities = 425/601 (71%), Gaps = 12/601 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| ||||| || Sbjct 113936 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCTATC 113879 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 113878 CTCTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 113819 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 | |||||| ||||||||||||| ||| | | | || | || |||| || | | Sbjct 113818 TACATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATA 113759 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||| || || ||||| | ||||||| ||||| | |||||| | || || | Sbjct 113758 AGTCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGC 113699 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT-ACTGCCTCTGATATAAT 18908 || || || | || || | || ||||| || ||| || | | || | ||||| | Sbjct 113698 TTCACGGGCAAGGCCTCCATGAGGAATTCCTG--CTAGATCTGAATGGCATTGATA-ATG 113642 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGT-ATAGA--AGATGTTTAAACATCAAACATGC 18965 | | | | || ||| | | || ||| | || || || ||||| ||||||| || || Sbjct 113641 ATTTCCCTCACTCTCTGC-TCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGC 113583 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| ||||| |||| ||||| ||||| || || | |||||| |||||||| | ||||| Sbjct 113582 AAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 113523 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 |||||| || | || || ||||||||||| || ||||| || ||||||||||| || || Sbjct 113522 CATCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCC 113463 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || | ||||| || || | | ||||||||| |||| || || | |||||| Sbjct 113462 TTCCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCA 113403 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || |||||||| |||||||| |||||||| ||||||||||| || | ||| || || Sbjct 113402 ACGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAG 113343 Query 19206 A 19206 | Sbjct 113342 A 113342 >seq81 Length=24260673 Score = 127 bits (140), Expect = 2e-24 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| |||||||| | |||||||| || |||||||| ||| Sbjct 5360706 TCATCTCTGCTGATGAGTTCATTGGAAAATGTGAGTCCAGGCATAAGACCTCTTTTCTTT 5360765 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 5360766 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 5360825 Query 19105 ACTAGTCTTT 19114 || | ||||| Sbjct 5360826 ACCACTCTTT 5360835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || ||| Sbjct 5341926 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTC 5341985 Query 18732 CATAAAATCAAATGGATTTT 18751 |||||||||||| ||||||| Sbjct 5341986 CATAAAATCAAAGGGATTTT 5342005 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||| Sbjct 5368895 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 5368951 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGA 19421 || ||||||| || |||||||| Sbjct 5368952 TGTGAGAGATAAAATACTTCTCATCTGA 5368979 >seq1 Length=9663177 Score = 109 bits (120), Expect = 6e-19 Identities = 113/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 2449024 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 2449081 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 2449082 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 2449141 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 2449142 TCCATAAAGTCAAATGGATTTTCTAC 2449167 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| | Sbjct 2450221 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 2450280 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 2450281 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 2450340 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 2450341 CCACAACCCGTTCTCC 2450356 >seq268 Length=8074579 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || ||||| ||||| || || Sbjct 364427 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 364486 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 364487 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 364546 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 364547 TTTCTTATACCATA 364560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/172 (72%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | || || || | Sbjct 362204 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCGATGTGGATGT 362263 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| ||||||||||| | || ||| Sbjct 362264 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCT---TAAGAACGG 362320 Query 47170 TT---TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || |||| || ||||| || || || |||| ||| || | ||| || || Sbjct 362321 TTTTCTGTGAAATTTCCCACACAGTCTTGTAAAGTTGCTTCAGGTCATCAGG 362372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561941439131160