Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq22337 145 6e-29 seq94 129 5e-24 seq18130 116 3e-20 seq151 87.8 1e-11 seq48 86.0 5e-11 >seq22337 Length=1224896 Score = 145 bits (160), Expect = 6e-29 Identities = 337/500 (67%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || || || || || || ||||| || || || ||| | || || || || || | Sbjct 950790 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTCGCC 950849 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAAT 550162 ||||| || || || | | | || ||||| || || | || ||||| || ||| Sbjct 950850 TTCACCGATACCGAGCGGCTTATCGGGGATGCCGCCAAGAACCAGGTAGCCA-TG--AAT 950906 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || || ||| | |||||||| |||||| | ||||| || | ||||||||| | Sbjct 950907 CCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTA 950966 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281 || || |||||||||| | ||||||||| ||| | | |||| || ||||| | Sbjct 950967 GTACAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAACCCAAG 951026 Query 550282 -TATTGAAGCTACTCATGAAGGATCTGTTAAACAAT-TTTCA--CCAGAACAAATTTCAT 550337 || || | | || |||| | ||| || |||| || || |||| || | Sbjct 951027 GTAATGGTGTCATACA--AAGGG---GAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTT 951081 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGG 550397 ||||||| | | || ||||| | || || |||||| | || || ||||| Sbjct 951082 CTATGGTACTGACAAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTTACCA 951141 Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||||||||| ||||| ||||| || ||||| || || || || |||| Sbjct 951142 ATGCCGTGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATG 951201 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||||| || || ||||| || | |||||||||||||| || |||||||| Sbjct 951202 CAGGTGTGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCA 951261 Query 550518 TTGCATATGGACTTGATAAA 550537 |||||||||| | |||||| Sbjct 951262 TTGCATATGGCTTAGATAAA 951281 >seq94 Length=18745391 Score = 129 bits (142), Expect = 5e-24 Identities = 123/155 (79%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 550374 CTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 |||||||| || ||| ||||| ||||||| | || ||||| || || || |||||| Sbjct 851217 CTTTTGTT--TCTAGACTGTTACCAATGCAGTTGTCACAGTACCTGCCTACTTCAATGAC 851274 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 || || ||||| ||||| |||||||||||| ||||||||| || ||||| ||| | || Sbjct 851275 TCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATC 851334 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||||| || ||||||||||| |||| ||||| Sbjct 851335 ATCAATGAGCCAACTGCTGCTGCTATTGCTTATGG 851369 Score = 102 bits (112), Expect = 7e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || |||||| ||||| | || |||| ||||| ||| Sbjct 850305 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCATGGAAAAGTGGAA 850364 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||| || ||||||| || || Sbjct 850365 ATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTACGTCGCTTTCACTGACACC 850424 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 |||| || | |||||||| ||||| |||||| Sbjct 850425 GAACGATTGATCGGTGATGCCGCAAAGAATCAAG 850458 Score = 87.8 bits (96), Expect = 1e-11 Identities = 294/454 (65%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 |||||| | || | ||||| ||||| |||||||| || |||| | ||| | | || Sbjct 851587 TGGAGACACCCACTTAGGTGGAGAAGACTTTGATAACCGAATGGTCAACCAT--TTTATT 851644 Query 551847 GAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTC 551904 | ||| || ||||| ||| | || || ||| | | | | | || |||||| Sbjct 851645 GCAGAGTTCAAACGCAAACATAAGAAGGACATCAGTGAAAACAAG--AGGGCAGTTCGTC 851702 Query 551905 GTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTA 551964 |||| | |||||||| ||| | || || || | ||||| || | || || ||| || Sbjct 851703 GTCTCCGTACTGCTTGTGAACGTGCTAAGCGTACACTTTCTTCCAGCACCCAGGCCAGTA 851762 Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024 |||| | ||||| | | ||| ||||| || | |||| ||||| | | ||| | Sbjct 851763 TTGAGATTGATTCTCTGTATGAAGGAATCGACTTCTATACCTCTATTACTCGTGCCCGCT 851822 Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAA 552084 ||||||| | | |||| || || | || | || || ||||| ||| | Sbjct 851823 TTGAAGAATTAAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTC 851882 Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 | ||| | ||| | || || || | | || || ||||| || || ||||| ||||| Sbjct 851883 GGGATGCTAAGCTAGACAAGTCTCAGATCCACGATATTGTCCTGGTGGGTGGTTCTACCC 851942 Query 552145 GAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 | || || || |||| || | || || |||||| || ||| || | ||| | | Sbjct 851943 GTATCCCCAAGATTCAGAAACTTCTACAAGATTTTTTCAACGGAAAAGAACTGAATAAGA 852002 Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | | || || |||||||||||||| || ||||| Sbjct 852003 GCATCAACCCTGATGAGGCTGTTGCTTACGGTGC 852036 >seq18130 Length=48600 Score = 116 bits (128), Expect = 3e-20 Identities = 357/538 (66%), Gaps = 28/538 (5%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||||| || ||||| || |||| ||||||| || | | ||||| || Sbjct 45440 GGCATTGATTTTGGCACCACCTACTCATGTG--GGTGTTTTCCAGCACAGGAAAGTGAAA 45497 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||| | || ||| |||| || ||| |||||| || || |||||| Sbjct 45498 ATAATTGCCAATGATGAGGGAAACTGAACCACCCCAAGTTATGTCTCCTT---TGAAACT 45554 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 ||||| || | ||||| | ||||| | || | || || || || ||||| || Sbjct 45555 GAACACTTGATCAGTGATACTGCAAAGAACCACGTTGCAATG--AACCCCACCAACACAG 45612 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 ||||||||| ||| | | |||| | || ||| | || | ||| || | |||| Sbjct 45613 GTTTTGATGCCAAATGCCGGAATGGATGTAGATTTGACAATGCTGTTGTCCAATCTGATA 45672 Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTC 550295 |||||| |||||| || || | ||| | || | ||| | ||| | || ||| || Sbjct 45673 TGAAGCTTTGGCCCTT-CATAGTGTGAGTGATGATGGCAGACCCAAAGTTTAAG-TAGAA 45730 Query 550296 ATGAAGGATCTGTTAAACAA-----TTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 |||| | |||||| || | |||| | | || |||||||||| | Sbjct 45731 TACAAGG----GAGAAACAAAAAGTTTCTATCCAG---AGGTGTCCCCTATGGTTTTGAC 45783 Query 550351 GAAAATGAAACAAA-CAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATA 550408 || ||||| ||| || || |||| |||| |||| ||| ||| ||| | Sbjct 45784 AAAGATGAAGGAAATCACAGAG-GCTTACCTTGG-GAAGACTACTACCAATGTAGTTGTC 45841 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 | ||||| || || ||||||||||| || | || |||| |||||||||||| |||| Sbjct 45842 ATAGTACCTGCTTACTTTAATGACTCTCAGCATCCGCCTACCAAAGATGCTGGAATTATT 45901 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 || | || ||||| ||| | || | || ||| || ||||||||| | |||| |||| Sbjct 45902 GC-AGTCTAAATGTACTTAGAATCACCACTGAGCCAACTGCTGCTTCTGTTGCTTATG 45958 >seq151 Length=15485885 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||| ||||| ||||| | ||||| || || || Sbjct 6283460 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 6283519 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||| ||| |||||||||| | |||||| | | || || ||||| || Sbjct 6283520 AAAGATGCAGGAACTATTGCTGGATTGAATGTTATGAGGATCATTAATGAGCC 6283572 >seq48 Length=2952444 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| || || || || || ||| | | ||| || |||||||||| ||| Sbjct 2404241 CCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGG--ATGTTGTAATCAGAAAGA 2404184 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || |||||||| || || ||||| ||||| || || Sbjct 2404183 GTACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATG 2404124 Query 563371 CCTTCTTTATCTTGAATTTT 563390 || ||||||||||| || || Sbjct 2404123 CCCTCTTTATCTTGGATCTT 2404104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028036343856310