Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq81 111 2e-19 seq63 102 1e-16 seq1 89.7 6e-13 >seq81 Length=24260673 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 5360704 CTTCATCTCTGCTGATGAGTTCATTGGAAAATGTGAGTCCAGGCATAAGACCTCTTTTCT 5360763 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 5360764 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 5360823 Query 37318 CTAC 37321 | || Sbjct 5360824 CCAC 5360827 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 |||||| ||| |||||||| | || || |||||||| || ||||||| || || ||||| Sbjct 5341926 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTC 5341985 Query 36947 CATAAAATCAAATGGATT 36964 |||||||||||| ||||| Sbjct 5341986 CATAAAATCAAAGGGATT 5342003 >seq63 Length=14173813 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| ||||| || |||||||| || || | |||||| Sbjct 113600 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATT 113541 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | || | || || | ||| ||||| | |||||||| Sbjct 113540 GGAAAATGTGAGGCCAGGCATCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGA 113481 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAA 37323 ||||||||||| || ||||| || | ||||| || |||| Sbjct 113480 ACCAGAAAAGAAGATTCCTTCCACAGTGGCAAAGGCCACAA 113440 >seq1 Length=9663177 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | || | ||| || Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | |||||||| ||||||||||| || ||||| || || ||||| || Sbjct 2450283 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 2450342 Query 37320 ACAA 37323 |||| Sbjct 2450343 ACAA 2450346 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 2449069 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 2449127 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 2449128 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 2449161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592140445076760