Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq21785 168 1e-36 seq63 154 3e-32 >seq21785 Length=2067537 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 1801513 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 1801572 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | || || | ||||| || ||||| || | |||||| |||||| Sbjct 1801573 TCCCGTAGGAGCCCAGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 1801632 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 1801633 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 1801692 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| ||||| || ||||| | ||| || Sbjct 1801693 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGATCTTCCATATTGATGGGG 1801752 Query 241625 GAC 241627 ||| Sbjct 1801753 GAC 1801755 >seq63 Length=14173813 Score = 154 bits (170), Expect = 3e-32 Identities = 366/544 (67%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || |||||||||||||||||||| |||||||| |||| || || |||| Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | | | | | || || | | || | || ||||| Sbjct 113816 CATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAAACCTAGCT---CCAGC 113762 Query 47957 AG--GT-GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | || | || || || |||| || |||| ||| | ||| ||| | || ||| Sbjct 113761 ATAAGTCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATG 113702 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||||||||| |||| |||| || |||| || ||||| | ||| | | Sbjct 113701 AGCTTCACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCATTGATAATG 113642 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | | | || | ||| || ||||| | | |||||| ||| | | || |||| Sbjct 113641 ATTTCCCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGA---ACATCAGGCAG 113585 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||| ||||| || || | ||| || || | ||||| || ||| ||| Sbjct 113584 GCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 113525 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | |||| |||||| || | ||| ||||| ||||| |||||||| Sbjct 113524 GGCATCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATT 113465 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || ||||| | || || || | || ||||| | | ||| | ||||| ||| Sbjct 113464 CCTTCCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATC 113405 Query 48314 CA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 || | ||| ||||| |||||||||||||| | || ||||| ||||| ||||| || Sbjct 113404 CAACGCAAA--GCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGA 113347 Query 48372 AGAG 48375 |||| Sbjct 113346 AGAG 113343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931255447752960