Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq22337 143 2e-28 seq94 116 2e-20 seq18130 111 1e-18 seq22439 86.0 4e-11 seq151 86.0 4e-11 seq48 86.0 4e-11 >seq22337 Length=1224896 Score = 143 bits (158), Expect = 2e-28 Identities = 331/494 (67%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 || || || || || || ||||| ||||| || || | || || || || || | Sbjct 950790 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTCGCC 950849 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 || || || || || | ||||| || ||||| || || | || | || ||||| Sbjct 950850 TTCACCGATACCGAGCGGCTTATCGGGGATGCCGCCAAGAACCAGGTAGCCATGAATCCC 950909 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || Sbjct 950910 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTAGTA 950969 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 ||||| |||||| | |||||||||| | || || |||| || || ||||| | || Sbjct 950970 CAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAACCCAAGGTA 951029 Query 474623 --GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 | | ||||| || |||| ||| || | || || |||| ||||| |||| Sbjct 951030 ATGGTGTCATACAAAGGGGAGAAA--AAAGCTTTCTATCCTGAGGAAATCTCTTCTATGG 951087 Query 474681 TTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 | | | || ||||| | || || ||| | | | | || || || || |||| Sbjct 951088 TACTGACAAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACCCTGTTACCAATGCC 951146 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || || ||||| ||||| ||||| |||||||||||||| || || || || ||||| || Sbjct 951147 GTGATCACTGTACCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATGCAGGT 951206 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 ||||| ||||| ||||| || | ||||| |||||||| ||||| || || |||| Sbjct 951207 GTGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCA 951266 Query 474860 TATGGTCTTGATAA 474873 ||||| | ||||| Sbjct 951267 TATGGCTTAGATAA 951280 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || |||||||| ||||| ||||| ||||| ||||| || || ||||| |||||||| Sbjct 952107 GGAATCCCTCCTGCACCCAGGGGAGTGCCTCAGATTGAGGTGACCTTTGACATTGATGCC 952166 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||||||||| ||||| || || Sbjct 952167 AATGGTATTCTCAATGTAACAGC 952189 >seq94 Length=18745391 Score = 116 bits (128), Expect = 2e-20 Identities = 322/487 (66%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| | ||| || | | | ||||||||||| | || | ||||| ||||| Sbjct 851555 GAAGATGGAATCTTCGAGGTCAAATCCACAGCTGGAGACACCCACTTAGGTGGAGAAGAC 851614 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455 |||||||| || | || | ||| | | ||| ||| ||||| | ||| |||| || Sbjct 851615 TTTGATAACCGAATGGTCAACCAT--TTTATTGCAGAGTTCAAACGCAAACATAAGAAGG 851672 Query 475456 TGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAA 475515 ||| | || | | | ||| | | ||||| | |||||||||||||||||||| Sbjct 851673 ACATCAGTGAAAACAAG--AGGGCAGTTCGTCGTCTCCGTACTGCTTGTGAACGTGCTAA 851730 Query 475516 GCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAAT 475575 ||| | |||||||| || || | | | |||| |||||||||| | ||||||||| Sbjct 851731 GCGTACACTTTCTTCCAGCACCCAGGCCAGTATTGAGATTGATTCTCTGTATGAAGGAAT 851790 Query 475576 TGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAG 475635 || | |||| |||||| | || |||||||| | | |||| || || | Sbjct 851791 CGACTTCTATACCTCTATTACTCGTGCCCGCTTTGAAGAATTAAATGCTGACCTGTTCCG 851850 Query 475636 AAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGT 475695 || | || || || || ||| || | ||| |||| || ||||| || || | Sbjct 851851 TGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCTAAGCTAGACAAGTCTCAGAT 851910 Query 475696 CCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTC 475755 ||| || ||||| || || || ||||| || | || || || || ||||| | | Sbjct 851911 CCACGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCCAAGAT-TCAGAAACTTCTAC 851969 Query 475756 ATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCAT 475814 | || |||| || || ||| | | ||| | || | || |||||||| |||||||| | Sbjct 851970 AAGATTTTTTCAACGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTT 852029 Query 475815 ATGGAGC 475821 | || || Sbjct 852030 ACGGTGC 852036 Score = 105 bits (116), Expect = 4e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| |||||| | || | || ||| |||||||||||||| | Sbjct 852727 ACCAAGGATAACAACCTACTTGGCAAGTTCGAACTCACAGGCATTCCTCCTGCTCCTCGT 852786 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| || ||||| ||||||||||||||||| |||||||| |||||||| || Sbjct 852787 GGTGTTCCTCAGATCGAAGTCACTTTTGATATTGATGCTAATGGTATCCTTAATGTCTCT 852846 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 852847 GCTGTGGATAA 852857 Score = 95.1 bits (104), Expect = 8e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| |||||| | ||| | || |||| || Sbjct 850298 TGCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCATGGAAA 850357 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||||||||||||||| || || || |||| || ||| || || |||| || Sbjct 850358 AGTGGAAATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTACGTCGCTTTCAC 850417 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 ||| || |||| | || || ||||| || || |||||| ||| Sbjct 850418 TGACACCGAACGATTGATCGGTGATGCCGCAAAGAATCAAGTTGC 850462 >seq18130 Length=48600 Score = 111 bits (122), Expect = 1e-18 Identities = 355/536 (66%), Gaps = 20/536 (4%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||||| || || || ||| |||| | ||||| || | | ||||| Sbjct 45438 TTGGCATTGATTTTGGCACCACCTACTCATGTG--GGTGTTTTCCAGCACAGGAAAGTGA 45495 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||||||||||||||| | || || |||| || ||| ||||| || ||| |||| Sbjct 45496 AAATAATTGCCAATGATGAGGGAAACTGAACCACCCCAAGTTATGTCTCCTTT---GAAA 45552 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 ||||||| | || | ||| |||| || | || | |||| || || || || Sbjct 45553 CTGAACACTTGATCAGTGATACTGCAAAGAACCACGTTGCAATGAACCCCACCAACACAG 45612 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 ||||||||| ||| | || ||| ||| ||||| || | |||||||||||||| Sbjct 45613 GTTTTGATGCCAAATGCCGGAATGGATGTAGATTTGACAATGCTGTTGTCCAATCTGATA 45672 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAAT 474630 || | |||||| || | ||| | | || || ||| | ||| | | ||| ||| Sbjct 45673 TGAAGCTTTGGCCCTTCATAGTG-TGAGTGATGATGGCAGACCCAAAGTTTAAGTAGAAT 45731 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | || ||||| ||| | ||| | | | | | || | |||||||| | || Sbjct 45732 ACAAG--GGAGAAAC-AAAAAGTTTCTATC--CAGAGGTGTCCCCTATGGTTTTGACAAA 45786 Query 474691 AATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA--AGTAACTGATGCAGTAATTAC 474747 ||||| ||| | | ||| | || ||||| |||| | | || ||| ||| | | Sbjct 45787 GATGAAGGAAATCACAGAG-GCTTACCTTGG-GAAGACTACT-ACCAATGTAGTTGTCAT 45843 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || || |||||||| ||||| | || | || |||||||| |||| ||||| Sbjct 45844 AGTACCTGCTTACTTTAATGACTCTCAGCATCCGCCTACCAAAGATGCTGGAATTATTGC 45903 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | |||| ||||| | | || | | ||| ||||| || || | ||||||||| Sbjct 45904 A-GTCTAAATGTACTTAGAATCACCACTGAGCCAACTGCTGCTTCTGTTGCTTATG 45958 >seq22439 Length=616 Score = 86.0 bits (94), Expect = 4e-11 Identities = 164/240 (68%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||||| || || || ||| |||| | ||||| || | | ||||| Sbjct 235 TTGGCATTGATTTTGGCACCACCTACTCATGTG--GGTGTTTTCCAGCACAGGAAAGTGA 178 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||||||||||||||| | || || |||| || ||| ||||| || ||| |||| Sbjct 177 AAATAATTGCCAATGATGAGGGAAACTGAACCACCCCAAGTTATGTCTCCTTT---GAAA 121 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 ||||||| | || | ||| |||| || | |||| | || || || || || Sbjct 120 CTGAACACTTGATCAGTGATACTGCAAAGAACCAAGTTACAATGAACCCCACCAACACAG 61 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 ||||||||| ||| | ||| ||| ||| ||||| || | |||||||||||||| Sbjct 60 GTTTTGATGCCAAATGCCTGAATGGATGTAGATTTGACAATGCTGTTGTCCAATCTGATA 1 >seq151 Length=15485885 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || | || ||||| ||| || || ||||||||| |||| || || Sbjct 6285318 AGGTGAACGACCCCTGACAAAAGACAATCACCTTCTGGGAACTTTTGATCTGACTGGAAT 6285377 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | || || || || |||||||| || ||||| || |||| ||||| Sbjct 6285378 TCCTCCTGCTCCCCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 6285437 Query 476155 TATTCTT 476161 |||||| Sbjct 6285438 CATTCTT 6285444 >seq48 Length=2952444 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| || || || || || ||||| | || ||||||| ||||| | | Sbjct 2404237 AGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTACGG 2404178 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| ||||||||||| || | || || ||||| || || || || Sbjct 2404177 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 2404118 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || ||||| ||||| || ||| ||| || || ||| || | || ||||| Sbjct 2404117 TTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 2404058 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || ||||| ||||| || || Sbjct 2404057 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTG 2404023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267157487520212