Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq101 378 8e-100 seq257 167 3e-36 seq222 98.7 1e-15 >seq101 Length=21342733 Score = 378 bits (418), Expect = 8e-100 Identities = 685/998 (69%), Gaps = 8/998 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || |||| ||| |||| ||| || | ||||| ||| ||| || || || || Sbjct 17005545 CAGGTGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCAAACTTGTTGGC 17005486 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||||| || || || ||| ||||||| || ||| || | ||||||||||| || Sbjct 17005485 GAACAAGTGATGC---TTGCGTAACATCCAGTTCAAGTCACCTGCTCCGAACACGCACAC 17005429 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | ||| || || |||| || ||||| | || || || | || |||||||| Sbjct 17005428 AGAACGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCACCCTTGGAAACATCACCTTC 17005369 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | |||||||||| || || ||||| || ||||| ||||||||||| |||| || || | Sbjct 17005368 GAAGTACTGCCATTTGACGAACCTTGCAATCGCGTGCATGTCGGACATGTCATACTTCTG 17005309 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | |||| | || ||| || || | || || | ||| | |||||||| || | || Sbjct 17005308 GCTTAGGGACAGGGAACCCGGGACATCAGGGATCCTCTGGATAGTGGCCCAGAGATACTC 17005249 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||||||||| || | ||| ||||| |||| |||| | | || Sbjct 17005248 ATCCGGGCTGTACGTGTCTTTCGCCCACTCCATAAACTTCTGGATTTTTTCATTCTCTAG 17005189 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | ||||| || | || || || || || ||||| || || | ||| | Sbjct 17005188 CACATACCCCACGTACTTCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTGT 17005129 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| || |||||| || ||||| | || | ||| ||||| | || Sbjct 17005128 CTCAAGAGGAGGGAGCATTTTGTCAGTCCCCGTGTTCGTCAGCTTTCCGTTCACAACCGT 17005069 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 | |||| |||||||| | | || | | |||||| | || || ||||| |||| Sbjct 17005068 ATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTGTT 17005009 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 |||| ||||| || |||| | ||| || || | ||| || || | |||||||| Sbjct 17005008 TTCACCCATCAGCGACTTGAGCTTCCGGACAATTTCCAAGTTGGTTTTAATAGGAAAGTC 17004949 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTC 160709 ||||||| | ||||||| ||||||||| | |||||||| || || || ||| | Sbjct 17004948 CATACCGCAAAGATTTATCAAGTACTTCCAGTCCGCGCTCA--TCCTGTAGACGTCTTGC 17004891 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || || |||||||| || ||||| ||| |||| || | | Sbjct 17004890 ATGCAGTTGAGGTCGGCCTGAACCCGACTCCAGGAGGCATACACCACGCTCTCCAGCTGA 17004831 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATC 160829 |||||||||||||||||| ||| || ||| |||| || | |||||| || ||| Sbjct 17004830 CTGGCCACAAAGACGTTACTGAAGCAGGACGCGATGCCAATCACCGCGGCCAAAAACGAA 17004771 Query 160830 TTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTG 160889 | ||| |||| ||||||||| | ||| || | ||||| ||| ||||||||||||| Sbjct 17004770 TCGGCCGATTTTCTGTCCACGTGAATGCAGTAGAAATTCTGGGGCATGTAGATGGCCCTG 17004711 Query 160890 AGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 || | || || | ||| || || || || || | ||| ||||| |||||||| |||||| Sbjct 17004710 AGGAGCCGGTCAAGCATTTCGATTTTGTGGTGAACCACTATAGAATAGGCTATGGGAAAC 17004651 Query 160950 TCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCA 161009 || | ||| || ||| || | | | ||| || || |||||| ||| ||| | Sbjct 17004650 TCCGCCTCTTCTTTACTAAGCGGTTGCATGATGTATTTGCGGCGCTTGATGAAAGAATTA 17004591 Query 161010 CAATCCCGCGTCATGTTGATATA-CGATCGCGCGTCCA 161046 || || | |||||||||||||| ||||| ||||| Sbjct 17004590 CAGTCTCTGGTCATGTTGATATAGTCATCGCTGGTCCA 17004553 >seq257 Length=8970480 Score = 167 bits (184), Expect = 3e-36 Identities = 214/294 (73%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || ||||| || || || || || ||||||||||||||| Sbjct 1180923 AGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGCACATG 1180982 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||||| |||||| ||||| || || | |||||||| ||| || Sbjct 1180983 TAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCC 1181042 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || || || | || || || | ||| || || ||||| || ||||||| | Sbjct 1181043 AGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACCACAACCCCATGGTTCTTG 1181102 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| || ||||| || ||| | ||||||||| || || |||| Sbjct 1181103 CTGAAGGTGACCATGTTTTCTGGGCTAACGGGCTTGACCTTCTGCCACGTCACAATCAAG 1181162 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGC 168443 | ||| |||| | ||||| || ||||| | ||||| || ||||||||| Sbjct 1181163 A---CTTCCTCGGAACTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGC 1181213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 167907 CCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTT 167966 |||| || ||||||| ||| | ||||| || || | |||||||| || ||||| Sbjct 1178346 CCCAGGTGCAGTACCTGGCAGACGACCTCC---TTCCCCAGCTGACTCTTGGGGTCTTTG 1178402 Query 167967 ACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTG 168026 || || | ||||| || ||| || || |||||| | || | | | || ||| Sbjct 1178403 ACCTGGAGGATGCTCGTGACAGACGTGGTCCCATTGGGGTGCGAGAGAACCTCAGTACTG 1178462 Query 168027 TTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCA 168086 || ||||||||||| || | |||||||||||| || ||||| || || || || | ||| Sbjct 1178463 TTTTCAATCCCTGACCCAGACACCTTCCAGAAGATCACAGGGGCTGGGCGGGCATTGGCA 1178522 Query 168087 GAGCAGGTAATATTTA 168102 ||||| || ||||||| Sbjct 1178523 GAGCAAGTGATATTTA 1178538 >seq222 Length=14049273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | || || || |||| | || | Sbjct 10156988 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCT 10157047 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | ||||| | | ||| Sbjct 10157048 GGAATATAATTCTCATAATTTTCCCTAGACGGGCCCAGAACAACAGGTACAGAGCCAGCT 10157107 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | |||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 10157108 AGAAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 10157167 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 10157168 AGATAAAATTTGCA 10157181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577047340198440