Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq48 91.5 3e-13 >seq48 Length=2952444 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | || | |||||| ||| || |||||| Sbjct 2403793 ATGCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCA 2403734 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || |||||||||||||| | ||||| || ||||| Sbjct 2403733 GAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGG 2403674 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || || || ||||| || | ||| | || Sbjct 2403673 GGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCC 2403614 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| |||||||| Sbjct 2403613 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 2403564 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || |||||| Sbjct 2403565 ATGCCACCTCTCAGGCGCAGGACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCA 2403506 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 2403505 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 2403446 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || || || ||||| || | ||| | || Sbjct 2403445 GGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCC 2403386 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || || || | || || | || ||||||||||| Sbjct 2403385 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 2403333 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | ||| | || | |||||| || || |||||| Sbjct 2404021 ATGCCACCTCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCA 2403962 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || |||||||||||||| | ||||| || ||||| Sbjct 2403961 GAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGG 2403902 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || || ||||||||||| || || Sbjct 2403901 GGGATGCCCTCTTTATCTTGGATCTT 2403876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984179555470650