Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq94 136 3e-26 seq8 100 2e-15 seq151 95.1 9e-14 >seq94 Length=18745391 Score = 136 bits (150), Expect = 3e-26 Identities = 364/550 (66%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || |||||||| |||||||| || | | | ||| |||| ||| || |||||| Sbjct 852036 GCACCGTAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTGAAA 851977 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| | ||||||| ||| | ||| || ||||| | || || || || | ||||| Sbjct 851976 AAATCTTGTAGAAGTT-TCTGAATCTTGGGGATACGGGTAGAACCACCCACCAGGACAAT 851918 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 || || | ||| || || || || || | |||| | |||| || || || || || Sbjct 851917 ATCGTGGATCTGAGACTTGTCTAGCTTAGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 851858 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | |||| ||| | | | |||||| || || | ||||| || | || Sbjct 851857 GGTGCCACGGAACAGGTCAGCATTTAATTCTTCAAAGCGGGCACGAGTAATAGAGGTATA 851798 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || |||||||| ||| |||||||| ||||| | | || || ||||| || Sbjct 851797 GAAGTCGATTCCTTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAAAG 851738 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGA 282133 || ||| |||||||||||||| || || | || | || | || | ||| | || | Sbjct 851737 TGTACGCTTAGCACGTTCACAAGCAGTACGGAGACGACGAACTGCCCTCTTGTT--TTCA 851680 Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGAT 282191 | | || | |||| ||| | ||||| ||| ||| | | ||| | || | || | Sbjct 851679 CTGATGTCCTTCTTATGTTTGCGTTTGAACTCTGCAATAAA--ATGGTTGACCATTCGGT 851622 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||| ||||| || || || | || | ||| | || | | | || | ||| | || Sbjct 851621 TATCAAAGTCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTGGATTTGACCTCGAAGATTC 851562 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| || | | || |||||| || ||||| || | ||||| || || | Sbjct 851561 CATCTTCAATAGTAAGGATAGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAGCA 851502 Query 282312 CATTCATTTC 282321 ||||| |||| Sbjct 851501 CATTCCTTTC 851492 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 851381 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 851322 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 851321 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 851262 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || || | ||| |||| Sbjct 851261 GCAGGTACTGTGACAACTGCAT 851240 >seq8 Length=1929094 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| || ||||| ||||||||||| || ||| | || |||||| | Sbjct 1351705 TGTACACTCATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 1351646 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | || || ||||||||||||||||||||| | | |||||| | Sbjct 1351645 GTGGTTGGGAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTTCGA 1351586 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 1351585 GAAGCTTCTCATAAA 1351571 >seq151 Length=15485885 Score = 95.1 bits (104), Expect = 9e-14 Identities = 210/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Minus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322 |||| ||||||||| ||| ||||| || ||| || ||| || ||| | || |||| Sbjct 6285616 TTTCCAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 6285559 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379 | | ||| || ||| ||| || ||||| | |||||| | | |||||| Sbjct 6285558 CTTCTCAGCATCATTAACCATCCTTTCAATCT---CTTCAGG---TGTCAGGCGATTTTG 6285505 Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433 ||| ||||| ||||| || || |||||| ||| ||| || | || ||||| Sbjct 6285504 GTCATTCGTAATTGTAATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 6285448 Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 6285447 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 6285388 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 |||||| || || || || || ||| ||||||||| | ||| ||||| || | Sbjct 6285387 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTTGTCAGGGG 6285328 Query 281554 TCGTTCACC 281562 ||||||||| Sbjct 6285327 TCGTTCACC 6285319 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || |||||||| || |||| |||||| | |||||||| ||||||||||||| || || Sbjct 6283572 GGCTCATTAATGATCCTCATAACATTCAATCCAGCAATAGTTCCTGCATCTTTGGTTGCC 6283513 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | ||| | ||| || ||||| || || ||||||| ||| |||| Sbjct 6283512 TGGCGTTGGGCATCATTGAAATAGGCTGGTACAGTAACAACTGCAT 6283467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739460987759094