Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq77 113 4e-20 >seq77 Length=12846609 Score = 113 bits (124), Expect = 4e-20 Identities = 97/119 (82%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 |||||||||||||||| |||||||||| ||| ||| |||| || | | | ||||||| Sbjct 5787700 CCACAGCTCTAGCTTCAGGTCTGAAAA-GAGGAGGCTTCTTCTGGGGGCCACAGAAGGCA 5787642 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 ||||||||||| ||| |||| | ||||||| |||||||||| || ||||||| |||| Sbjct 5787641 TTTTAAAGAAATGGCCCAGAAGAGAAATCTGTAGGGCACTTACGTAGTCTTCCAAAAGT 5787583 Score = 93.3 bits (102), Expect = 4e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || |||||||| |||| |||||||| || ||||||||||||||||||| | || Sbjct 5789703 CACAAAATCCAAAACAGATTATGAGAAAAATCCAATATAATTTATTAAATAATTCCCGAG 5789644 Query 231 GGCTTCTTTAAGAAGCATTAACAA 254 |||| ||| ||| ||| ||||||| Sbjct 5789643 GGCTCCTTCAAGGAGCGTTAACAA 5789620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438429424242000