Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq48 170 4e-37 seq77 149 1e-30 seq262 98.7 2e-15 seq103 89.7 1e-12 seq64 87.8 4e-12 seq241 84.2 4e-11 >seq48 Length=2952444 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | |||||| || || |||||||| || || |||||||| Sbjct 2403790 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 2403731 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 2403730 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2403671 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || |||||||| ||||| || || |||||||| || |||||| | || || || Sbjct 2403670 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACC 2403611 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| ||||| |||||||| Sbjct 2403610 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 2403564 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | ||||| || || |||||||| || || |||||||| Sbjct 2404018 CCACCTCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 2403959 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 2403958 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2403899 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || |||||||| ||||| || || |||||||| || || ||| | || || || Sbjct 2403898 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 2403839 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 2403838 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2403792 >seq77 Length=12846609 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| ||||| || ||||||||||| || || ||||| || || || ||||| Sbjct 3757398 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3757339 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 3757338 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3757279 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || || ||| | || || || Sbjct 3757278 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 3757219 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || |||| ||||| || || |||||||| Sbjct 3757218 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3757172 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||||||||| || || ||||| || || || ||||| || | | || Sbjct 3756474 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 3756415 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || ||||| ||||||||||| | ||| || || || || || || || ||||| Sbjct 3756414 TCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCCTTG 3756355 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||||||||| || ||| | || || || |||| || || Sbjct 3756354 TCCTGGATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 3756295 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| ||||| || || ||||||||| Sbjct 3756294 GTTTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 3756259 >seq262 Length=24878108 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || | ||||||| | | | |||||||||||||| Sbjct 23365841 TGAAGAGTGGACTCCTTTTGAATGTTGTG-TCAGATAAAGTACGTCCGTCTTCTAGTTGC 23365899 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | |||| ||||| ||||| |||||||| || || |||||||||||||| || ||||| Sbjct 23365900 TCGCCAGGGAAGATCAGTCTCTGTTGATC-GGGGGAATTCCTTCCTTATCCTGGATCTTG 23365958 Query 82728 GCTTTTACATTTTCAATCGTATC 82750 || | |||| |||| | ||||| Sbjct 23365959 GCCTCTACAATTTCTGTTGTATC 23365981 Score = 89.7 bits (98), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 |||||| |||| || ||||| || ||||| || ||||| |||| |||||||||||| Sbjct 2524908 TCTTCTTGTTGCTT----GCAAAAATCAGTCTCTGCTGATCAAGAGGAATTCCTTCCTTA 2524963 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || | | ||||| || | ||| ||||| || |||| ||| || Sbjct 2524964 TCCTGGATCTTGGCCTGTGTGTTTTCTATTGGATCTGGGGGTTCAACCTCCAGAGTGATG 2525023 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||| | | || || ||||| ||| |||| Sbjct 2525024 GTCTTCCCTATAAGGGTTTTCACAAAAATCCGCAT 2525058 >seq103 Length=31278376 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 82622 TTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGAT 82681 |||||| |||||||| || ||||| | || || || || ||||| || ||| | Sbjct 755049 TTTCTGGATATTATAGTCTGATAGGGCACAGCCATCCTCCAGCTGTTTGCCTACAACAGT 754990 Query 82682 TAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTC 82741 || | ||||| || || || || | ||| ||||| || || ||||| ||||| | Sbjct 754989 CAGACACTGTTGGTCAGGCAAAATGCCCTGCTTGTCTTGGATTTTGGCTTTGACATTCTT 754930 Query 82742 AATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || || ||| | || | ||||| | || || ||||||||||||| ||||| ||||| Sbjct 754929 GATGGTGTCACTGGGCTGCACTTCAAGGGTGATAGTCTTGCCTGTCACTGTCTTCACAAA 754870 Query 82802 TATCTGCAT 82810 |||||||| Sbjct 754869 GATCTGCAT 754861 >seq64 Length=13122742 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 |||| | |||||| | || ||||||| || | || ||||| ||| | || ||| Sbjct 10903372 AGAATCAGGTGCAGGATTGACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCT 10903313 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 ||||| | | || ||||||| || || || || || || | || |||| ||||| Sbjct 10903312 TCTAGCTCGCTGCCTACAAAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCC 10903253 Query 82719 TGAATCTTT--GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 || ||||| | ||| ||||||||||| || ||| | | | || |||| ||| || Sbjct 10903252 TGGATCTTATAGTTTTCACATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGA 10903193 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||| ||||| ||||| | || || |||||| Sbjct 10903192 TCTTGCCAGTCAAGGTCTTCAGGAAGATTTGCATT 10903158 >seq241 Length=15830963 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAA 82722 ||||||| ||||||||||| |||| | || || ||||| ||||||||||| || | || Sbjct 6314129 GTTGTTTGCCAGCAAAGATCAGTCCCTCCTGCTCAGGAGGGATTCCTTCCTTCTCCTCAA 6314070 Query 82723 TCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGC 82782 |||| || |||| |||||| || ||||| |||| || || | | | ||||| | Sbjct 6314069 TCTTGGCCTTTAGATTTTCTATTGTATCTGAGGGTTTAACCTCGATCCTGACGGTCTTCC 6314010 Query 82783 CT-GTCAACGTCTTTACAAATATCTGCA 82809 || || | || || || || ||||||| Sbjct 6314009 CTCGTGAGGGTTTTCACGAAAATCTGCA 6313982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981527565054641