Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq77 136 4e-27 seq48 125 7e-24 seq157 91.5 1e-13 seq51 91.5 1e-13 seq121 82.4 7e-11 >seq77 Length=12846609 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||| || || Sbjct 3757140 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 3757081 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || |||||||||||| ||||||||||||||||| |||||| |||| Sbjct 3757080 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3757021 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || |||||||| || Sbjct 3757020 ACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 3756961 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3756960 TTCACGAAGATCTGCATG 3756943 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||| || || Sbjct 3757368 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 3757309 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || |||||||||||| ||||||||||||||||| |||||| |||| Sbjct 3757308 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3757249 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| || |||||||| || Sbjct 3757248 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 3757189 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3757188 TTCACGAAGATCTGCATG 3757171 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||| || || Sbjct 3756912 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 3756853 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || |||||||||||| ||||||||||||||||| |||||| |||| Sbjct 3756852 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3756793 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| || || |||| || Sbjct 3756792 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTC 3756733 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3756732 TTCACGAAGATCTGCATG 3756715 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||| || || Sbjct 3756456 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCA 3756397 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | | |||||||||||| |||||||| |||||||| |||||| |||| Sbjct 3756396 GCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 3756337 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| |||||||||| || | ||||| |||||| ||||||| || Sbjct 3756336 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTACCGGTCAAGGTC 3756277 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3756276 TTCACGAAGATCTGCAT 3756260 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | | || | || || ||||| || || Sbjct 3756684 GTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGGGGGCCCATCTTCCAGCTGTTTCCCG 3756625 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || |||||||||||| ||||||||||||||||| |||||| |||| Sbjct 3756624 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTG 3756565 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| || || |||| || Sbjct 3756564 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTC 3756505 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3756504 TTCACGAAGATCTGCATG 3756487 >seq48 Length=2952444 Score = 125 bits (138), Expect = 7e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || |||||||| | ||| | | | || || |||| Sbjct 2403995 ATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCT 2403937 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | ||||||| ||||||||| || |||||||| || || || ||||| Sbjct 2403936 GCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCT 2403877 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| |||||||||| || | ||||| ||| ||||||| Sbjct 2403876 TGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 2403817 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || ||||| ||||||||| Sbjct 2403816 TCAGGGTCTTCACGAAGATCTGCATG 2403791 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | || | | | || || ||||||||||| Sbjct 2404216 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTACGGCCA-TCTTCCAGCTGCTTGCC 2404158 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| |||| ||||||||| || |||||||| || || || |||||| ||| Sbjct 2404157 AGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTT 2404098 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 2404097 CACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 2404038 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 2404037 CTTCACGAAGATCTGCATG 2404019 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 2403532 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 2403474 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || |||||||| || || || |||||| ||| Sbjct 2403473 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTT 2403414 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || |||||||||| || | ||||| ||| ||||||||||| || Sbjct 2403413 CACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 2403354 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2403353 CTTCACGAAGATCTGCAT 2403336 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||| | Sbjct 2403761 GGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTAC 2403703 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || |||||| || Sbjct 2403702 CAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 2403643 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || |||||||||| || | ||||| ||| ||||||||||| | Sbjct 2403642 TCACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 2403583 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 2403582 TCTTCACAAAGATCTGCATG 2403563 >seq157 Length=16089461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||| | | ||||||||||||||| ||||||||||| | | | | |||||| || Sbjct 13071729 AAAGGCAGGGTGGACTCTTTCTGGATATTGTAATCTGAGACAGGGTAGCCGTCCTCCGGC 13071670 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || |||| || |||| | ||||||||| | || |||||||| || ||||| ||| Sbjct 13071669 TGTGTGCCTGCAAAAATCTGACGCTGCTGGGCCGGCGGGATGCCCTCTTTGTCTTGGAT- 13071611 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | |||| ||||| ||||||| | | || ||||||||| |||| Sbjct 13071610 TTTGGCTTTGACATTCTCAGTGGTGTCACGGGGCTCCGCCTGGAGGGTGACGGTCTTGCG 13071551 Query 133634 GG 133635 || Sbjct 13071550 GG 13071549 >seq51 Length=29663373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 133508 CTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| ||||| | ||| || |||| || ||||||||||| || |||||||| |||||||| Sbjct 12117884 CTCCAGCTGTTCGCCTGCAGAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 12117825 Query 133568 GGTGATCTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGG 133626 || |||| |||| || | |||| ||||| ||||||||||| ||| || | || Sbjct 12117824 TTGGA-CTTTGGCTTTGACATTCTCAGTGGTGTCAGTGGGCTCCACCTCGCGGGCTATGG 12117766 Query 133627 TTTTGCCGGTCAGAGTTTTTACGAAAATCTGC 133658 || |||| ||| | || || || | |||||| Sbjct 12117765 TTGTGCCCGTCGGGGTCTTCACAAGGATCTGC 12117734 >seq121 Length=26706505 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||| | |||||||| |||| || ||||||||||| |||||||||| ||||||| | || Sbjct 18641120 AGCGGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGAGGGATGCTCTCCTTGT-GTTG 18641062 Query 133572 ATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 ||| || |||| | |||| ||||| | ||||| || | || ||||| ||| || Sbjct 18641061 GAATTTGGCTTTGACATTCTCACTGGTGTCACT-GGCTCAACTTTGAGGGTGATGGTCTT 18641003 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGC 133658 ||| | |||||| ||| | || ||| || Sbjct 18641002 GCC-GCCAGAGTCTTTGCAAAGATCGGC 18640976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483276867499560