Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq101 331 1e-85 seq257 210 3e-49 seq222 134 2e-26 seq241 113 5e-20 >seq101 Length=21342733 Score = 331 bits (366), Expect = 1e-85 Identities = 637/931 (68%), Gaps = 15/931 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | || | ||| || | |||||||| || || | ||| ||| Sbjct 17005561 CCAGGGCTTTATGCCTCAGGTGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 17005502 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| ||||||| ||||||| | | | || ||||| || | || || | Sbjct 17005501 TGTCAAACTTGTTGGCGAACAAGTGATGCTTG--CGT-AACATCCAGTTCAAGTCACCTG 17005445 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||||||||||||||| || |||||||| || || ||||| || || || |||| || | Sbjct 17005444 CTCCGAACACGCACACAGAACGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCACCCT 17005385 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || ||| |||| ||||| || |||||||| | || || |||||||||| Sbjct 17005384 TGGAAACATCACCTTCGAAGTACTGCCATTTGACGAACCTTGCAATCGCGTGCATGTCGG 17005325 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || || || || ||| | || | ||||| | | Sbjct 17005324 ACATGTCATACTTCTGG-CTTAGGGACAGGGAACCCGGGACATCAGGGATCCTCTGGATA 17005266 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || || || || ||||| || |||| ||||||||| |||| | | Sbjct 17005265 GTGGCCCAGAGATACTCATCCGGGCTGTACGTGTCTTTCGCCCACTCCATAAACTTCTGG 17005206 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | || ||||| ||| | || | || || || || Sbjct 17005205 ATTTTTTCATTCTCTAGCACATACCCCACGTACTTCCTACTGACCACGAAATAGGCACTG 17005146 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | ||||||| || |||||| |||||||| | | Sbjct 17005145 CCTGAAAACAGAGGTGTCTCAAGAGGAGGGAGCATTTTGTCAGTCCCCGTGTTCGTCAGC 17005086 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| | || ||| | ||| ||||||| | | ||| ||| | | Sbjct 17005085 TTTCCGTTCACAACCGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTC 17005026 Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 || || ||||| |||| |||| || | ||| |||| || || || || | ||| Sbjct 17005025 TCAGTTTCTAGGTTGTTTTCACCCATCAGCGACTTGAGCTTCCGGACAATTTCCAAGTTG 17004966 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 || |||| |||||||| | ||||| ||||| || | || ||||| | |||| | Sbjct 17004965 GTTTTAATAGGAAAGTCCATACCGCAAAGATTTATCAAGTACTTCCAGTCCGCGCTCATC 17004906 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | ||| | || || | ||||| || |||||||| || |||||||| || || ||||| Sbjct 17004905 CTGTAGACGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAGGAGGCATACACC 17004846 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC- 162836 |||||||||| | | |||| |||||||| || ||| || || | || || ||||| Sbjct 17004845 ACGCTCTCCAGCTGACTGGCCACAAAGACGTTACTGAAGCAGGACGCGATGCCAATCACC 17004786 Query 162837 --GGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 ||||| | ||| ||||| ||| ||| || || ||||| | |||||| | ||||| Sbjct 17004785 GCGGCCA---AAAACGAATCGG--CCGATTTTCTGTCCACGTGAATGCAGTAGAAATTCT 17004731 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 | || |||||||||||| || | | || | ||| || || || ||||| ||||| | Sbjct 17004730 GGGGCATGTAGATGGCCCTGAGGAGCCGGTCAAGCATTTCGATTTTGTGGTGAACCACTA 17004671 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||||| |||||||| ||||| ||||| || Sbjct 17004670 TAGAATAGGCTATGGGAAACTCCGCCTCTTC 17004640 >seq257 Length=8970480 Score = 210 bits (232), Expect = 3e-49 Identities = 223/294 (76%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || || || ||||||||||| || | | Sbjct 1180918 CAGAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 1180977 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||||||||| || || | || || || ||| Sbjct 1180978 ACATGTAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGA 1181037 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || || || | | ||||||||| | ||||||||| ||||| || || | Sbjct 1181038 GTTCCAGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACCACAACCCCATGGT 1181097 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| | ||| | |||||||||||| || | Sbjct 1181098 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACGGGCTTGACCTTCTGCCACGTCACAA 1181157 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 | || ||||| | | |||| |||||||||||||| |||||||||||||||| Sbjct 1181158 TCAAGACTTCCTCGGAACTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCA 1181211 Score = 105 bits (116), Expect = 8e-18 Identities = 160/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 171528 TCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGATCTT 171587 |||||| ||| | || | ||| | ||||||| | |||| ||||| || || |||| Sbjct 1178344 TCCCCAGGTGCAGTACCTGGCAGACGACCTCCT---TCCCCAGCTGACTCTTGGGGTCTT 1178400 Query 171588 TTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGT---AGAACGGTTTTAG 171644 | || || || ||||| || ||||| || ||||| || | || ||||| | || Sbjct 1178401 TGACCTGGAGGATGCTCGTGACAGACGTGGTCCCATTGGGGTGCGAGAGAACC---TCAG 1178457 Query 171645 TACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCAG 171704 |||| ||||| || || || || | || ||||| || || ||||| ||||| | ||| Sbjct 1178458 TACTGTTTTCAATCCCTGACCCAGACACCTTCCAGAAGATCACAGGGGCTGGGCGGGCAT 1178517 Query 171705 TAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTG 171750 | ||||||||||| || |||| ||||||||||| | |||||| Sbjct 1178518 TGGCAGAGCAAGTGATATTTAGGTGGTCTTCGAAGAATTTATAGTG 1178563 >seq222 Length=14049273 Score = 134 bits (148), Expect = 2e-26 Identities = 392/592 (66%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || || | |||||| || | | || || | | || Sbjct 10156938 TCCAGTTAAAGTAACTAAGGTATAGCTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 10156997 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | |||||||||||| | ||| | || | |||| Sbjct 10156998 CTAGCTCACTGGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCTGGAATATAAT 10157057 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || ||||| || || || | || || || | ||||| | || || | || || Sbjct 10157058 TCTCATAATTTTCCCTAGACGGGCCCAGAACAACAGGTACAGAGCCAGCTAGAAAAGCAT 10157117 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 10157118 TATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAAAATT 10157177 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | Sbjct 10157178 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAAGGCTTG 10157235 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| || || || || ||| | | Sbjct 10157236 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCGTTATAATA-CTTGACCCTCGCAT 10157294 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | ||| |||||| || || || |||||||| || ||||| |||||| | || || Sbjct 10157295 GCTCGGGGTTCCAGTTACTTACAACCCAGCACACCAACTT-CTCTTTACTTGGCAC---- 10157349 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 10157350 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 10157408 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 ||||||| | ||| || | || | ||||| |||| ||||| || || ||| Sbjct 10157409 AGTCGCGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGCTCTATGCCACTCTTCTGGGGCG 10157468 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 ||| | | || ||||| || |||||||| |||||||| || |||| ||| || Sbjct 10157469 TGTGAGTTGGGGATTCCAAATTCATCCAAATCCACTTCTGGAAGGGTGGCCT 10157520 >seq241 Length=15830963 Score = 113 bits (124), Expect = 5e-20 Identities = 230/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| |||||||| | ||||||||| || || || ||| | | |||||| Sbjct 12540176 ACCATCTCGGCGTTGGTCTTTATGGGAAAGTCTGTCCCACACGTATTCAGTAAGTATTTC 12540117 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||| | || | | || |||| | |||||| || || ||||| || | Sbjct 12540116 CA--TGGCACTGGGCTCTGGAGCAAGTCCTCCATACAGTTGAGGTCAGCCTGCACCCTGG 12540059 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || ||||| || |||| ||| | || |||| | |||||||| ||| |||| Sbjct 12540058 ACCAGGAGGCGTAAACCACGCGAACCAGCTTACTGGCTATGAAGACATTTGGGAAGCACG 12539999 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || ||| || | || ||| | ||| | | || | |||| ||| || || || Sbjct 12539998 ACACAATCGCCTTGACCGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 12539941 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||| | ||||||||||| || || | ||| | ||| ||||| |||||||||| Sbjct 12539940 ACAGTAGATGTTCTGAGGGGCATACGAAGCTCGCAGCAGTCTTTCGAAGCTCTCTATCTT 12539881 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | ||| ||||| ||||| ||||| || ||||| || Sbjct 12539880 CTCGTGGACCACCATAGAGTACGCGATAGGGAAGTC 12539845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578259779102400