Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq77 107 1e-18 seq48 89.7 3e-13 >seq77 Length=12846609 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| || | ||||| || |||||| ||| || || |||||||| || || Sbjct 3757398 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3757339 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 3757338 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3757279 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| || | ||| || | |||||| || | ||||| Sbjct 3757278 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 3757220 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 3757219 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3757172 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || ||||| | || ||| Sbjct 3756924 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3756865 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | ||||| ||||| Sbjct 3756864 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3756805 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 3756804 ATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 3756746 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || || || || ||||||||||| Sbjct 3756745 ACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756716 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || ||||| | || ||| Sbjct 3757152 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3757093 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | ||||| ||||| Sbjct 3757092 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3757033 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| || | ||||||||| | ||||| || | ||||| || || Sbjct 3757032 ATCTTCGCCTTGA-CATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTT 3756974 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || || ||||||||||| Sbjct 3756973 ACCGGTCAGGGTCTTCACGAAGATCTGCAT 3756944 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || ||||| | || ||| Sbjct 3756468 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3756409 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| || ||||| ||||| | |||||| || | || | || || ||||| Sbjct 3756408 AGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3756349 Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| ||| |||||| || | ||||| || | ||||| ||||| Sbjct 3756348 ATCTTCGCCTTGA-CATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTT 3756290 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||| || || || || || ||||||||||| || Sbjct 3756289 ACCGGTCAAGGTCTTCACGAAGATCTGCATTGT 3756257 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || | | | | || ||| Sbjct 3756696 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGGGGGCCCATCTTCC 3756637 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | ||||| ||||| Sbjct 3756636 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3756577 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 3756576 ATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 3756518 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || || || || ||||||||||| Sbjct 3756517 ACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756488 >seq48 Length=2952444 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || ||||| |||||| || ||||||||||| || Sbjct 2404246 CCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 2404187 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || || |||||||||| | |||||| || | || Sbjct 2404186 AGAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGGG 2404127 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || || ||| |||| || | |||||| || | ||||| Sbjct 2404126 ATGCCCTCTTTATCTTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCAC 2404068 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 2404067 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2404020 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| || | |||| ||| || || |||||| || ||||||||||| || Sbjct 2404018 CCACCTCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 2403959 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 2403958 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2403899 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || || ||| |||| || | |||||| || | ||||| Sbjct 2403898 ATGCCCTCTTTATCTTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCAC 2403840 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 2403839 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2403792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328608579180480