Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq77 91.5 1e-13 seq48 91.5 1e-13 >seq77 Length=12846609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | ||||| || || ||||||||||| || ||| || Sbjct 3757390 CAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 3757331 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| |||| | |||| | | ||| || || || || |||||||| Sbjct 3757330 CCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTC 3757271 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | |||||||| || | || Sbjct 3757270 CTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 3757211 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || ||||| ||||| || || | ||| ||||||||| Sbjct 3757210 GATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 3757171 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| |||||||| |||| | Sbjct 3757137 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 3757078 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || || || |||||||| || || || || || | Sbjct 3757077 AAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACA 3757018 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | || ||||| ||||| || || Sbjct 3757017 TTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTC 3756958 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 3756957 ACGAAGATCTGCATG 3756943 >seq48 Length=2952444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| ||| | | | |||||||| ||||||||||| || | || || Sbjct 2404010 CAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCG 2403951 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| ||||| | | |||| || | ||| || || || || ||||| || Sbjct 2403950 GCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTC 2403891 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || |||| | ||| | || || | |||||||| || | || Sbjct 2403890 TTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 2403831 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | ||| ||||||||| Sbjct 2403830 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 2403791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476469294972840