Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq257 271 9e-68 seq10 185 1e-41 seq36 168 8e-37 seq199 131 2e-25 seq125 122 1e-22 seq50 98.7 1e-15 >seq257 Length=8970480 Score = 271 bits (300), Expect = 9e-68 Identities = 252/320 (79%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| |||| | ||| ||||||||| || || ||| | | |||||| ||| Sbjct 1181239 GTGGTGACCCAAAATGAAAAAATGCCGCTGAACACACCTGCTTCCTTAAGATGCTCTCTG 1181180 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| |||| || ||||||| || |||||||| |||||||| | ||||| Sbjct 1181179 CAAAGTTCCGAGGAAGTCTTGATTGTGACGTGGCAGAAGGTCAAGCCCGTTAGCCCAGAA 1181120 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| ||||||||||| || || ||||||||| Sbjct 1181119 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTACAAGGACAAG 1181060 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| ||||||||||| | |||| | ||||||||||| || || ||||| |||||| | Sbjct 1181059 ATAAATATCACCCAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTG 1181000 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| |||| |||||||| || || ||||| |||||||| ||||| || Sbjct 1180999 GAGGATGAAGGGTGTTACATGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGA 1180940 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 ||||||||||||||||| Sbjct 1180939 ACAGCCTGCCTCACCCTCTC 1180920 Score = 214 bits (236), Expect = 2e-50 Identities = 199/253 (79%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || || |||||||| || || |||||||| || |||| Sbjct 1178589 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTCTTCGAAGACCACCTAAATATCA 1178530 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| ||| || |||||| | || ||||||| | Sbjct 1178529 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTTCTGGAAGGTGTCTGGGTCAGGGA 1178470 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||||||||||| |||||||| || || | ||||| || || ||||| || || | | Sbjct 1178469 TTGAAAACAGTACTGAGGTTCTCTCGCACCCCAATGGGACCACGTCTGTCACGAGCATCC 1178410 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| ||||||| || ||||| Sbjct 1178409 TCCAGGTCAAAGACCCCAAGAGTCAGCTGGGGAAGGAGGTCGTCTGCCAGGTACTGCACC 1178350 Query 171628 TGGGAAATGTAAC 171640 |||| || || || Sbjct 1178349 TGGGGAAGGTGAC 1178337 >seq10 Length=40277251 Score = 185 bits (204), Expect = 1e-41 Identities = 140/165 (85%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| |||||||| ||||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 9528508 CTTCAGGCCGGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 9528567 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||||||||||| ||||||||||||||| || ||||| |||| Sbjct 9528568 GGGCACGCCCAGGCCCATGTCCCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTT 9528627 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| |||||||| || || ||||| Sbjct 9528628 CCCCACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 9528672 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||| ||||| || ||||| || | || || | ||||| Sbjct 9531091 GCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCTCTGTTG 9531150 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 |||| ||| | | | || || | ||||||| |||||||||||| ||||||| Sbjct 9531151 CAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCGTCCCAGATTTTCACTCCC 9531210 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || || ||||||| || || || ||| ||| || Sbjct 9531211 TTGGAAGACAGGTCCTTAGCGTTTGTAGATCCCTGGAAGA 9531250 >seq36 Length=6971902 Score = 168 bits (186), Expect = 8e-37 Identities = 136/167 (81%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 585994 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 586053 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| | ||| ||||| |||||||| || |||| Sbjct 586054 TGCCCCAGGCTGAGAACCAC------------GACCCAGACATCAAGGAGCACGTGAACT 586101 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| | ||||||||||||| ||| Sbjct 586102 CCCTGGGGGAAAAGCTGAAGACCCTGCGGCTGAGGCTGCGGCGCTGT 586148 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | ||||| |||||||| |||||||| ||||| || || || ||||||| Sbjct 588307 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAATTTGACATCTTCATCAACTACA 588366 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 588367 TAGAAACCTACATGACAA 588384 >seq199 Length=18468921 Score = 131 bits (144), Expect = 2e-25 Identities = 532/827 (64%), Gaps = 45/827 (5%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| || | ||||| | ||||| || |||| | || | |||| Sbjct 9208788 GTACTCCCTGGTGTTCGTGGTCGGGCTGCTGGGCAACGCTGTGGTAGTTCTGATACTCAC 9208729 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||||||||||| ||| |||||||||||||||||| ||||| |||| || || Sbjct 9208728 GAAATACAAGAGGCTCCAGATTATGACCAACATCTTCCTGCTCAACTTGGCTATTTCGGA 9208669 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | |||||||| || |||||||| || | || ||| |||| || Sbjct 9208668 CTTGCTCTTTCTATTCACCCTGGTGTTCTGGATTCA-TTACGCT-GGGTGGAA----TGA 9208615 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | | |||||||||| | | || |||| |||||| | || Sbjct 9208614 GTGGGTTTTTGGCGCTTTCATGTGTAAGCTCCTCTCTGGGCTTTATTACGTGGGCTTATA 9208555 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| |||| | |||||||| || || | || |||| Sbjct 9208554 CAGCGAGATCTTTTTCATCATCCTGCTGACCGTAGACAGGTACCTGGCCATCGTCCACGC 9208495 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || || || | || |||| |||| Sbjct 9208494 CGTGTTTGCCCTTCGAGCCCGGACTGTCACTTTTGGTGTCATCACGAGTGTCCTCACCTG 9208435 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | | | | || | || ||||||||||| || | ||| || | | Sbjct 9208434 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATAAGTCC--CAAGACGAG 9208377 Query 9030 AGGCA--AGGGGGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGGG 9074 | || | ||||| | ||||| ||| | |||| |||||| | Sbjct 9208376 GGCCAACATTTTGTCTG-CTTGCCTCTTTACCCAAAAGACCAAGAAGACAAATGGAAGCG 9208318 Query 9075 GGTTGATGTTACCAGCATGA----CCATGGTCACCCTCATCCTGCCTTTGCTTATCATGG 9130 | ||| | || |||| || |||| || |||||| |||||||||||| Sbjct 9208317 TTTCCATGCTCTGAGAATGAATATCCTGGGTCTTGCT----CTGCCTCTGCTTATCATGG 9208262 Query 9131 CCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAAC 9189 ||||||||| ||| || || || || | | |||| ||| || ||| Sbjct 9208261 GTGTCTGCTACTCTGGAATTATTAAAACGCTGCTGAGATGCCC----CAGTAAGAAAAAG 9208206 Query 9190 CTGCACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCC 9249 | ||| || ||||||||| |||| ||||| | | ||| | || |||| ||| Sbjct 9208205 TACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGACACCC 9208146 Query 9250 TACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGA 9308 |||||| | | ||| || | | | ||| | | | |||| |||||| ||||| Sbjct 9208145 TACAACCTGGTCCTCCTTCTCTCTGCTTTTCAAACGATCTTCTTTGAGGCCAG-TTGTGA 9208087 Query 9309 AGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCA 9365 || | ||| | ||||| ||||| | |||| | ||| ||||||||| ||| || Sbjct 9208086 ---GCAGAGCAAACAGCTGGACGTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCA 9208030 Query 9366 CTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||||||||| |||||||||| || || || || | ||||| Sbjct 9208029 CTGCTGCGTCAACCCCATCATCTACGCCTTCGTCGGGGAGAGGTTCC 9207983 Score = 104 bits (114), Expect = 3e-17 Identities = 199/291 (68%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | | ||||| |||||| |||| |||||||| Sbjct 9251753 GTACTCCCTGGTGTTCATCATTGGCGTGGTCGGCAACATCCTGGTCCTCCTGGTCCTCAT 9251812 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| || |||||||| ||| | ||| | ||||||||| | || Sbjct 9251813 GCAATACAAGAGGCTCAAGAGCATGACCAGCATTTACCTCCTGAACCTGGCCATCTCGGA 9251872 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGG-- 8786 |||||| | | ||||| || ||||| ||||| ||| | | ||| || ||||| Sbjct 9251873 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATCGACTACAAGCTCAAGGATGACTGGGT 9251932 Query 8787 TGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 | | |||| | ||| |||||||| | ||| |||| || || | Sbjct 9251933 TTTCAGTGACGGC-ACC--------TGTAAGTTGCTCTCGGGGCTTTATTACACGGGCTT 9251983 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 |||||| || || | |||||||||||| |||| | |||||||| || || Sbjct 9251984 GTACAGTGAGATCTTTTTTATCATCCTGCTGACCATCGACAGGTACCTGGC 9252034 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||||| Sbjct 9252469 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCCTACACACACTGCTGCGTCAACCCCG 9252528 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || || || || ||||| Sbjct 9252529 TCATCTACGCCTTCGTCGGGGAGCGGTTCC 9252558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | || || | | ||||| ||||| |||| ||||||| Sbjct 9117250 TACTCGCTGGTGTTCATCTTCGGCTTCGTGGGCAACATGCTGGTTGTCCTCATCCTCATC 9117191 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | || ||||||| |||||| |||| ||||||||||| | ||| Sbjct 9117190 AACTGCAAAAGGCTGAAGAGCATGACCGACATCTACCTGCTCAACCTGGCCGTCTCCGAC 9117131 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | ||||| |||| || ||| Sbjct 9117130 CTGCTCTTCCTCCTCACCATCCCGTTCTGG 9117101 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | || || | | ||||| ||||| |||| ||||||| Sbjct 9135296 TACTCGCTGGTGTTCATCTTCGGCTTCGTGGGCAACATGCTGGTTGTCCTCATCCTCATC 9135237 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | || ||||||| |||||| |||| ||||||||||| | ||| Sbjct 9135236 AACTGCAAAAGGCTGAAGAGCATGACCGACATCTACCTGCTCAACCTGGCCGTCTCCGAC 9135177 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | ||||| |||| || ||| Sbjct 9135176 CTGCTCTTCCTCCTCACCATCCCATTCTGG 9135147 >seq125 Length=3337254 Score = 122 bits (134), Expect = 1e-22 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 146914 ATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAG 146973 |||||| | |||| ||||| || ||||| | || || || |||| || || || ||| Sbjct 3252541 ATTTTCGGCAGCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAG 3252600 Query 146974 TCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG---CGAGTAGCTG 147030 | | ||||| ||||| | | ||| || ||||||||||||||||| | | ||||| Sbjct 3252601 TTAGCTGGCTTCAGGCCCGCGATGTGTGCGACCATGTAGGTGAGCAGGGCCTACGAGCTG 3252660 Query 147031 GCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAG 147090 || | |||| || || |||||||||||||| | |||||| ||| ||| | |||| || Sbjct 3252661 GC---GATGAAAGGCACACCCAGGCCCATGTCTCACGACCTGTGGCACAACGGGCAAGAC 3252717 Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCC 147144 |||| || | ||||||| ||| ||| ||| ||||| || | ||| ||| Sbjct 3252718 AGCTTGCCATTTACCACGTAGAACCCGCAAAGGGCATGGCAGGGAGCCAGGGCC 3252771 >seq50 Length=19047857 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCC-CAGGGTGTG 146966 ||||| |||||||| || || || || || ||||| | | || || | ||| ||||| Sbjct 18247501 AGCTGCATTTTCAGAGGTTCAACATGATTCAGGTAAA--TACGTGTATCTTCAGAGTGTG 18247444 Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 || ||||| || ||||| ||||| || | || | | || ||||| ||| | | | Sbjct 18247443 TACCAAGTCGCCTGGCTTCAGGCCTGTGATATGTGTGATCACGTAGGCGAGTGGGGTGCG 18247384 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 || ||| | ||||||||| || ||| ||||||||| || | |||| ||||||||||||| Sbjct 18247383 GCAGGCCAAGTTGAAGGGCACAGCCAAGCCCATGTCTCCTGCCCTCCGGTACAGCTGGCA 18247324 Query 147087 CGA 147089 || Sbjct 18247323 GGA 18247321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583314273741600