Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq77 118 1e-21 seq48 93.3 4e-14 >seq77 Length=12846609 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 3756486 CCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3756427 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| ||||| || Sbjct 3756426 AGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGG 3756367 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | ||||| Sbjct 3756366 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 3756307 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || |||||||||||||| || || || ||||| || |||||| Sbjct 3756306 TCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 3756259 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 3757170 CCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3757111 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| ||||| || Sbjct 3757110 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3757051 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | ||||| Sbjct 3757050 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 3756991 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| | || || ||||| || ||||| Sbjct 3756990 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3756944 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 3756942 CCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3756883 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| ||||| || Sbjct 3756882 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3756823 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 3756822 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 3756763 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || || || || ||||| || ||||| Sbjct 3756762 TCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756716 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 3756714 CCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAT 3756655 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | | || || |||||||| || ||||| ||||| | |||||| ||||| || Sbjct 3756654 AGGGGGGGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3756595 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 3756594 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 3756535 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || || || || ||||| || ||||| Sbjct 3756534 TCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756488 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | |||| || | ||| || ||||| ||||| || ||||||||||| Sbjct 3757398 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3757339 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| ||||| || Sbjct 3757338 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3757279 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 3757278 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 3757219 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| | || || ||||| || ||||| Sbjct 3757218 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3757172 >seq48 Length=2952444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || || || || || || |||||||| || | Sbjct 2403562 CCACCTCTCAGGCGCAGGACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 2403503 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 2403502 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2403443 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || || || || | || || | ||||| Sbjct 2403442 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACC 2403383 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| || ||||||||| Sbjct 2403382 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 2403332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505247923943880