Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq63 259 7e-64 seq312 165 1e-35 seq1 129 8e-25 seq268 123 3e-23 seq81 123 3e-23 >seq63 Length=14173813 Score = 259 bits (286), Expect = 7e-64 Identities = 415/595 (70%), Gaps = 6/595 (1%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 39327 ||| |||||| |||| || | |||| ||| ||| | | |||||| ||||| || | Sbjct 113936 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATCCT 113877 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || || ||||| || | ||||| || || ||||| || ||||||| ||| ||||| | Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447 ||| || ||||| ||||| | | | | || |||| |||| || || | Sbjct 113816 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATAAG 113757 Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507 || ||||| ||||| || || ||| ||||| | |||||| | || ||||| || Sbjct 113756 TCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTT 113697 Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGA 39567 || || | |||||| | || || || | | ||| | | ||| | | || || Sbjct 113696 CACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCATTGATAATGATTTC 113637 Query 39568 TGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTC 39627 | ||| || ||| ||| ||| | | ||||| ||||| | |||||| ||||| Sbjct 113636 CCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTC 113577 Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687 ||| |||| |||||||||||| ||||| | ||| || ||||||||||| |||||||| || Sbjct 113576 ACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 113517 Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747 ||||| || |||| ||| ||||| | |||||||| |||||||||||||| ||||| || Sbjct 113516 GCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 113457 Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTG 39804 | ||||| || |||| | ||||| || | | || || | ||||| | Sbjct 113456 AGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAA 113397 Query 39805 TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 |||||||| || ||||||||||||||||||||||| || || ||||| |||||| Sbjct 113396 AGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGA 113342 >seq312 Length=4428592 Score = 165 bits (182), Expect = 1e-35 Identities = 602/927 (65%), Gaps = 69/927 (7%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 39327 ||| |||||| |||| || |||| ||| ||| | | |||||| ||| ||| | Sbjct 260618 TTAGAAGTCAGCATCCAAGCTAAAAGAATTCTCTGTTGGACTTGACATCACTGTCATCCT 260677 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA-TATTTT 39386 || | |||| | | || || || || ||||| || |||| || ||| | |||| | Sbjct 260678 CTGAGACCCACCTCCTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGCAGTGAAAATATTCT 260737 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 | | || ||| | ||||| || | | || | ||| ||| || | || | Sbjct 260738 TCTTAAAGTCAGATGGATT-------TTCGACTCTTGCTAAAA-CCTCGCTCCCACATAA 260789 Query 39447 ATCTATCTGCAACAAATTCTATGTA-TGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || ||||| |||||||| || || || ||| | | | |||||||| || | ||| Sbjct 260790 GTCGGTCTGCCACAAATTCAATATAGTGCTTTATTAACATG-CAATTCATCCCAACGAGA 260848 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || | || | ||||||| || ||||||| ||| || || || | | ||||| Sbjct 260849 TTCCCGGGCAAGGCCTCCGGGAGGAACTCTTGTTCTATCCTAACAGCATTGATAATTAT- 260907 Query 39566 GATGTTACTAC-CTCATCA-CTCGGTGG----ATGCAATAAATGTTTAAACATTAAGCAG 39619 || || | ||| ||| ||| | || ||| | | ||||| |||| | |||| Sbjct 260908 ----TTCCTTCACTC-TCAGCTCCGAGGGTTCATGGACCAGGTGTTTGGACATCAGGCAG 260962 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || |||||||| | | || |||||||| ||||| ||| | | ||||||||||| ||| Sbjct 260963 GCAAAGTCACAGTATGAACCTTCATCTCTGCTAATAAATACCTGGGAAAATGTGAGGCCA 261022 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAAT-ATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738 ||||| || |||||||| ||| | | || || || | ||||||||| |||| Sbjct 261023 GGCAT----------TTCTTGAGCCAGAATGACGACA-CAGAAAAACCAGAAAAGGAGAT 261071 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT-TATGT---- 39793 |||| || || || || || |||| | || || | | ||| | | | ||| Sbjct 261072 CTCTTCCACAGCAGC-AAGGCCACAACCCGTTCCCC---ATTGGTAGCCTCTTTGTCCCC 261127 Query 39794 -ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| | | |||||||| || | |||||| |||||||||| || || || ||||| Sbjct 261128 AATCCAATGCGAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATCGTGTCAATGGCATT 261187 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 |||||| ||| || | ||||| || | | || | | ||||| |||| Sbjct 261188 GAAGAGA-AAT--------TCCCCTTCTTTGGAATGTTTGTCGGTGAGGAGACTGCACAT 261238 Query 39913 --------TTCTGA-ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 | |||| ||| ||||| || | || || || || || || ||||| | || Sbjct 261239 CGCATCCATGCTGAGATGTATGTTGTCCGTGGCAATTTGGAAGCCATAGAAACAGCGGGC 261298 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 ||| || || || || ||| | ||| | ||| |||| |||||||| ||||| ||||| Sbjct 261299 TTCTGTGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATC 261358 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT 40083 ||| || ||| | || |||| ||||| |||||||| | || || ||| Sbjct 261359 ACTTGCCGCAGAGAAAGCCAGAACATGGCATATAAAATA---GCCCTCAGGCTTCAGGGA 261415 Query 40084 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTC 40143 | |||| || || || || | ||| || ||||||||||||||||| || ||||| Sbjct 261416 TTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAGGCCTC 261475 Query 40144 TGCCTTTTTGTACATGTTCCATATATC 40170 || || || | ||| | ||| | ||| Sbjct 261476 AGCTTTCTTATCCATCTGCCAAAGATC 261502 >seq1 Length=9663177 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || ||||| || | Sbjct 2450221 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 2450280 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| | Sbjct 2450281 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 2450340 Query 39759 CAACAA 39764 | |||| Sbjct 2450341 CCACAA 2450346 >seq268 Length=8074579 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || || |||||||| ||||| | || Sbjct 364427 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 364486 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 364487 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 364546 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 364547 TTTCTTATACCAT 364559 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 385491 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCA 385550 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | || || | || || ||| | || ||||| || |||| Sbjct 385551 GGATGGCATAGTCAGGGTGCTTAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTAT 385610 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 385611 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 385661 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 373737 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 373796 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| || Sbjct 373797 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 373856 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 373857 TCCAGGTAAATAGC 373870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 380728 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 380787 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | ||||| || | | || | ||||||| Sbjct 380788 TATGTTTCAATAGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 380847 Query 70111 ATATGCTGAGGTCGTTCTACC 70131 ||||| || |||| |||| || Sbjct 380848 ATATGTTGTGGTCTTTCTGCC 380868 >seq81 Length=24260673 Score = 123 bits (136), Expect = 3e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || |||||||||||||||||||| ||||| | || || Sbjct 5360706 TCATCTCTGCTGATGAGTTCATTGGAAAATGTGAGTCCAGGCATAAGACCTCTTTTCTTT 5360765 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 5360766 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 5360825 Query 39761 ACAAGTCT 39768 || | ||| Sbjct 5360826 ACCACTCT 5360833 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || |||| Sbjct 5368895 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 5368951 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || |||||||| || ||||| | | | | || ||||||| | || ||| |||| Sbjct 5368952 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 5369011 Query 40107 ATA 40109 ||| Sbjct 5369012 ATA 5369014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686704281491160