Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq312 98.7 8e-16 seq81 95.1 1e-14 seq117 86.0 5e-12 >seq1 Length=9663177 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| |||||| || ||||| ||||| || |||||||| Sbjct 2452366 CGGTTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGGTGTTTCTATGGCTTCCAAATTGC 2452308 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||||||||| || || || || ||||| |||||| Sbjct 2452307 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACATACATTAAAGAT 2452250 >seq312 Length=4428592 Score = 98.7 bits (108), Expect = 8e-16 Identities = 171/247 (69%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 43733 TGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACT 43792 ||||| ||| | || ||||| |||| || ||||||||||| ||||| || ||| | | Sbjct 261496 TGGCAGATGGATAAGAAAGCTGAGGCCTCCTTTTGGACAGCTGAAGAGGTGGATCTTTCC 261437 Query 43793 AAAGAC-TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGT 43851 || ||| || | | ||| | | | || | || ||||||||| || Sbjct 261436 AAGGACATTCGGCGCTGGGAATCCCTGAAGCCT----GAGGGCTATTTTATATGCCATGT 261381 Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911 | |||| || | ||| || || || || ||||| |||||||| ||||| |||||| Sbjct 261380 TCTGGCTTTCTCTGCGGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAG 261321 Query 43912 GCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| | ||||||| || ||||| ||||| || |||||||||| || || Sbjct 261320 CCAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCACGGACAA 261261 Query 43972 TATTCAT 43978 || ||| Sbjct 261260 CATACAT 261254 >seq81 Length=24260673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| |||||||| ||||| |||||||| || ||||| | Sbjct 5342005 AAAATCCCTTTGATTTTATGGAAAACATTTCGTTAGAAGGGAAAACAAATTTCTTTGAGA 5341946 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| |||| ||| ||||| || | | |||||| Sbjct 5341945 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 5341911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | |||||||| Sbjct 5372841 TTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 5372782 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 5372781 TCCTTCTGGACAGCAGAAGAGGT 5372759 >seq117 Length=18647643 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/154 (72%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------C 19601 ||||||||| || || | |||||| | || || ||||| ||||| ||||| | Sbjct 1940780 TTTGCACATAATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGC 1940721 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 |||| | ||||| ||||||||||||||||| || | ||||| ||| | || || || Sbjct 1940720 TGGTAGTACCGGAGTTCATGACACTGTTGTCAACCAGTTGCTGTCCAAAATTGATGGGGT 1940661 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 | |||||||| || || ||||| || || ||| Sbjct 1940660 AGAGCAACTGAACAACATCTTAGTCATCGGTATG 1940627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397340620883095