Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 seq63 82.4 8e-11 >seq1 Length=9663177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGG 60061 ||||||||||||||||| ||||| || || || | | || ||||||||||| || ||||| Sbjct 2450329 GTGGAAGGAATCTTCTTTTCTGGTTCTTT-TGCGTCGATATTCTGGCTCAAGAAACGTGG 2450271 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||| | || ||||| || || ||| | | || |||| Sbjct 2450270 CCTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGG 2450221 >seq63 Length=14173813 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGG 60061 ||||||||||||||||| ||||| || || || | | || |||||| |||| || ||||| Sbjct 113457 GTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGTCGATATTCTGGTTCAAGAATCGTGG 113515 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||| ||||| ||||| | || ||||| || || ||| | | || |||||| Sbjct 113516 CCTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGGC 113567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548361483597360