Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq28 109 6e-19 seq63 104 3e-17 seq1 98.7 1e-15 seq8 95.1 1e-14 >seq28 Length=53244476 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 36962152 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 36962211 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| |||||||| || ||| Sbjct 36962212 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 36962271 Query 117425 ATCGT 117429 ||||| Sbjct 36962272 ATCGT 36962276 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 36962152 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 36962211 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||||| ||||| || |||||||||||||||||| Sbjct 36962212 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 36962271 Query 152149 ATCGT 152153 ||||| Sbjct 36962272 ATCGT 36962276 >seq63 Length=14173813 Score = 104 bits (114), Expect = 3e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826 |||| ||||||||||| || | |||||| ||||| | ||||||||||| || ||||| | Sbjct 113568 AGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCACGAT 113509 Query 74827 TCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCA 74885 |||| ||||| || || | | || || |||||| |||||||| ||||| ||| ||| Sbjct 113508 TCTTGAACCAGAATATCGACGCA-AAAGAACCAGAAAAGAAGATTCCTTCCACAGTGGCA 113450 Query 74886 AAGGCGACAAGGCGTT 74901 ||||| |||| |||| Sbjct 113449 AAGGCCACAACCCGTT 113434 >seq1 Length=9663177 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| || ||||| ||||| Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || || |||||| |||||||| ||||| ||| |||||||| Sbjct 2450283 AGCCAGAATATCGACGCA-AAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGC 2450341 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 2450342 CACAACCCGTT 2450352 >seq8 Length=1929094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || |||| ||||||||||||| || | ||||| || || Sbjct 1347410 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 1347469 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 1347470 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1347529 Query 117425 ATCGT 117429 || || Sbjct 1347530 ATGGT 1347534 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| ||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 1347410 GTGAAGATATATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 1347469 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 1347470 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1347529 Query 152149 ATCGT 152153 || || Sbjct 1347530 ATGGT 1347534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547053073276200