Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq101 170 3e-37 >seq101 Length=21342733 Score = 170 bits (188), Expect = 3e-37 Identities = 256/362 (71%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| ||||||||||| ||||| || || ||| | |||||||| ||||| ||| | Sbjct 17004640 GAAGAGGCGGAGTTTCCCATAGCCTATTCTATAGTGGTTCACCACAAAATCGAAATGCTT 17004699 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || || ||||| |||||||||||| || ||||| |||||||| | ||||||||| Sbjct 17004700 GACCGGCTCCTCAGGGCCATCTACATGCCCCAGAATTTCTACTGCATTCACGTGGACAGA 17004759 Query 13803 AAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || || | ||| || || ||| || | | | |||||| |||||| ||||| Sbjct 17004760 AAATCGGCCGATTCGTTTTTGGCCGCGGTGATT--GGCATCGCGTCCTGCTTCAGTAACG 17004817 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| | |||| | ||||||||| | |||||||||||| || ||||||| Sbjct 17004818 TCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTGTATGCCTCCTGGAGTCGGGTTCAGGCCG 17004877 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 |||||| ||||||| ||| | || || | |||| |||| || | || | Sbjct 17004878 ACCTCAACTGCATGCAAGACGTCTACAGGATGAGCGCGGACTGGAAGTACTTGATAAATC 17004937 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCC 14040 | ||||| |||||||| || | || |||||| |||| || || ||| ||| ||| | | Sbjct 17004938 TTTGCGGTATGGACTTTCCTATTAAAACCAACTTGGAAATTGTCCGGAAGCTCAAGTCGC 17004997 Query 14041 TG 14042 || Sbjct 17004998 TG 17004999 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 |||||||||||||| || ||| | || |||||||| | ||||| || | || | || Sbjct 17005231 GACACGTACAGCCCGGATGAGTATCTCTGGGCCACTATCCAGAGGATC--CCTGATGTCC 17005288 Query 14337 GGGGGGATCCCCGTTC--ACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAG 14392 ||| |||| || | | | || |||| |||| || |||||| || | | || Sbjct 17005289 CGGGT--TCCCTGTCCCTAAGCCAGAAGTATGACATGTCCGACATGCACGCGATTGCAAG 17005346 Query 14393 GTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTG 14452 ||||||||| ||||| |||| ||| || ||| | || || |||| ||||| || || Sbjct 17005347 GTTCGTCAAATGGCAGTACTTCGAAGGTGATGTTTCCAAGGGTGCCCCCTACCCACCCTG 17005406 Query 14453 CGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAA 14512 | || ||||||| | | | ||| | ||||| | || ||| |||| ||| || Sbjct 17005407 CAGTGGGGTCCACGTGCGTTCTGTGTGCGTGTTCGGAGCAGGTGACTTGAACTGGATGTT 17005466 Query 14513 GAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || | ||| |||||||||||||||| ||| Sbjct 17005467 ACGCAAGCATCACTTGTTCGCCAACAAGTTTGAC 17005500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658543068637440