Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq10 170 2e-37 >seq10 Length=40277251 Score = 170 bits (188), Expect = 2e-37 Identities = 136/164 (83%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||||||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 9528512 AGGCCGGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 9528571 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||||||||||| |||||| ||||| || || ||||| |||| | | Sbjct 9528572 ACGCCCAGGCCCATGTCCCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTTCCCC 9528631 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| |||||||||||||| ||||| || Sbjct 9528632 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAG 9528675 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || |||||||||||||| || || || || || || | || || |||| Sbjct 9531083 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 9531142 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | |||| ||| ||| ||||||| ||||||| || ||||||||||||||||| | Sbjct 9531143 CTCTGTTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCGTCCCAGATTT 9531202 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||||| ||| || || || | |||||| || || Sbjct 9531203 TCACTCCCTTGGAAGACAGGTCCTTAGCGTTTGTAGATCC 9531242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406192450503348