Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq48 111 1e-19 >seq48 Length=2952444 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 2403791 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 2403850 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || ||||| ||||| ||||| || || || || Sbjct 2403851 TGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 2403910 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || ||||||| | || |||| |||||||| Sbjct 2403911 GCAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2403970 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||||||| | ||| |||| |||| || | |||||||| Sbjct 2403971 CATTCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGCCTGAGAGGTGGCAT 2404021 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 2404019 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 2404078 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || ||||| ||||| ||||| || || || || Sbjct 2404079 TGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 2404138 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 2404139 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGATTACAA 2404198 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || |||||||| | || ||||| | ||| || |||||||| Sbjct 2404199 CATCCAGAAAGAGTCGACTCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 2404247 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||||||||||| | || || || || ||||| || Sbjct 2403563 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 2403622 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || || || ||||| ||||| ||||| || || || || Sbjct 2403623 TGATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 2403682 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || ||||||| | || |||| |||||||| Sbjct 2403683 GCAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2403742 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || |||| |||| || | |||||||| Sbjct 2403743 CATCCAGAAAGAGTCAACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGCAT 2403793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 2403336 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2403395 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || ||||| ||||| ||||| || || || || Sbjct 2403396 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 2403455 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 2403456 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2403515 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | || |||| |||| || | |||||||| Sbjct 2403516 ATCCAGAAAGAGTCGACTCTCCACCTGGTCCTGCGCCTGAGAGGTGGCAT 2403565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434788908482880