Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10 167 2e-36 >seq10 Length=40277251 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || || |||||||| |||||||| ||||| || || |||||||| ||||| || | Sbjct 9528520 GACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAG 9528579 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| ||||| || || || ||||||||||||||||| || ||| | |||||||| Sbjct 9528580 GCCCATGTCCCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTTCCCCACGTAGAA 9528639 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||| |||||||| || || ||||||||||| ||||| Sbjct 9528640 CTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAGAGGAAGATC 9528684 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || |||||||| |||||||||| |||||||| | ||| Sbjct 9528684 GATCTTCCTCTGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGGGAAC 9528625 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || || ||||| |||||||| | || ||||| ||| Sbjct 9528624 GGCGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGGGACATGGGCCTGGGCGTGCCCTTC 9528565 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || ||||| |||||||| |||||||| || || ||| Sbjct 9528564 AACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCGCACGTC 9528520 Score = 98.7 bits (108), Expect = 9e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || |||||||| || || || || ||||| || || || || || Sbjct 9531085 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 9531144 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || ||| ||| | |||||| |||||||||||||||| ||||||||||| || Sbjct 9531145 CT-GTTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCGTCCCAGATTTT 9531203 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||| ||| ||| || || ||||| | ||| || Sbjct 9531204 CACTCCCTTGGAAGACAGGTCCTTAGCGTTTGT 9531236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| | ||||| || || ||| ||| ||||| ||||||||||| ||||||||||| Sbjct 9531236 ACAAACGCTAAGGACCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAACGGGTCTCGA 9531177 Query 34355 GACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTA 34413 ||||| |||||| | ||| ||| || | | || || || || || ||||| || || Sbjct 9531176 GACTTCTTGGACAGCCTGGGATTCTGCAAC-AGAGAAGAAGGGGATTTAGGCCCAGTTTA 9531118 Query 34414 CGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || |||||||| || |||||||| || || Sbjct 9531117 TGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 9531085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448128935473680