Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq100 246 3e-60 seq257 176 4e-39 seq113 131 1e-25 seq25 127 2e-24 >seq100 Length=27299513 Score = 246 bits (272), Expect = 3e-60 Identities = 386/550 (70%), Gaps = 7/550 (1%) Strand=Plus/Minus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| || || ||||| || | || |||||||| || || || || | ||| Sbjct 17814721 ACGCTAAACTGCATAGCCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGGACCTG 17814662 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACT 2256 || ||||| || || | |||||||| || ||| |||| |||||| | | ||| | Sbjct 17814661 CCCTGGCCCCCGCTCAGGAATGAATTCAAGTTTTTCCAAAGAATGACCACAACCTCCTCA 17814602 Query 2257 GACTTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 | | ||||||||| | || |||||||| || ||||||||||| || |||| | Sbjct 17814601 GTAGAAGGGAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCC--TG 17814544 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371 | ||| | | ||||| || ||||||| ||| | |||||||| | |||| || || | Sbjct 17814543 AGAAGAATCGACCTTTAAAGGACAGAATTAATTTAGTTCTCAGCAACGACCTCAAGGAAC 17814484 Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG 2431 | |||| || ||||| ||| ||| |||||| | ||| | || | || |||| Sbjct 17814483 CTCCACAAGGAGCTCATTTTCTTGGCAAAAGTCTGGATGATGCCTTAAAACTTATTGAGC 17814424 Query 2432 GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATG 2491 |||||||||| | | | ||||| | | |||||||| | || || || ||||| ||| Sbjct 17814423 AACCAGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATA 17814364 Query 2492 AGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 |||| ||| | | | | || | | | || ||| | ||||||||| |||| ||| Sbjct 17814363 AGGAAGCCATGAACAAACCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCAGGAAT 17814304 Query 2552 TTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 ||||| |||| |||| || ||||||||| || | ||||||||||| || | |||| Sbjct 17814303 TTGAAAGTGACACATTTTTTCCAGAAATTGATTTGGACAAATACAAACTTCTGCCAGAAT 17814244 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671 ||||||||||| |||| || || || || || || |||| ||||||||||| ||| Sbjct 17814243 ACCCAGGTGTTCCTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTAT 17814184 Query 2672 ATGaaaaaaa 2681 |||| || || Sbjct 17814183 ATGAGAAGAA 17814174 >seq257 Length=8970480 Score = 176 bits (194), Expect = 4e-39 Identities = 186/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| || ||||| || || || | |||||||||||||||| ||| Sbjct 1181167 GAAGTCTTGATTGTGACGTGGCAGAAGGTCAAGCCCGTTAGCCCAGAAAACATGGTCACC 1181108 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || ||||| || || || || || || Sbjct 1181107 TTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTACAAGGACAAGATAAATATCACC 1181048 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || |||||||||||||| || |||| ||||||||| Sbjct 1181047 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 1180988 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||| ||| | || || |||||||| ||||||||||| ||||||| || || || Sbjct 1180987 TGTTACATGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTC 1180928 Query 1521 ACCCT 1525 ||||| Sbjct 1180927 ACCCT 1180923 >seq113 Length=12518016 Score = 131 bits (144), Expect = 1e-25 Identities = 280/414 (68%), Gaps = 11/414 (3%) Strand=Plus/Minus Query 2270 ATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG--CCTTT 2327 || |||| |||||| || |||||||| | || |||||| || ||| || ||||| Sbjct 1084668 ATTTTGTGATTATGCATAGGAAGACATGACTCTCTCTTCCC--TAGAAGAAGTGACCTTT 1084611 Query 2328 GAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCA 2387 || ||||||| ||| | ||||| |||| | || ||||| || | || || ||||| Sbjct 1084610 AAAGGACAGAATTAATTTAGTTCT---TAGAGAACTCAAAGAACCTCTACAAGGAGCTCA 1084554 Query 2388 CTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGA 2447 || | | |||||| | ||| || | || | || | | |||||||||| | | Sbjct 1084553 TTTCCTAACCAAAAGTCTGGATGGTGCCTTAAAACTGATTAAA---CCAGAATTAACAAA 1084497 Query 2448 CAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAG 2507 | ||||| |||||||||||| | || || || | ||| ||| |||| || | || Sbjct 1084496 GAAAGTGGACAAGATTTGGATAGTGGGAGGCAGTTTTGTTTATAAGGAAGCCACGAAAAA 1084437 Query 2508 ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATA 2567 | || | | | || ||| | |||||||| ||| | |||||||| || | |||| Sbjct 1084436 GCCAAGCCATCTCAAACTATTTGTGACAAGGATCATGC-AGAATTTGAAAGTAACACATT 1084378 Query 2568 CTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTC 2627 || ||||||| | || | | ||| || | ||| |||| |||| |||||| || Sbjct 1084377 TTTTCCAGAAACTGATTTGGGAAGATATAAGCTTCTTCTAGAATATCCAAGTGTTCTTTC 1084318 Query 2628 TGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || ||||| |||| || |||| || |||||||| ||||| |||| || Sbjct 1084317 TGGTGTCCAAGAGGAAAGAGGTATTAAGTAGAAATTTGAAGTATATAAAAAGAA 1084264 >seq25 Length=6982734 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 2182690 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2182749 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 2182750 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2182809 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| ||||||||| || Sbjct 2182810 ATTGCCCTGTGGATGACTGA 2182829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414356479845916