Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq48 147 5e-30 seq77 140 8e-28 seq62 96.9 8e-15 seq10 95.1 3e-14 seq23819 86.0 1e-11 seq121 84.2 5e-11 >seq48 Length=2952444 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||||||||| || ||||| |||| |||||||| | | ||| | ||||| Sbjct 2403548 CAGGACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 2403489 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 2403488 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 2403429 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| ||||||||| || || ||||| || | ||||| || Sbjct 2403428 TTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 2403369 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 2403368 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 2403333 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||||||||| || ||||| |||| |||||||| | | ||| | |||||| Sbjct 2404231 AGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCT 2404172 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || || | || ||||| || || || || || || ||| Sbjct 2404171 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 2404112 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||||||| || ||||| || | ||||| ||| Sbjct 2404111 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2404052 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 2404051 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2404020 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || ||||| |||| |||||||| | | ||| | ||||| Sbjct 2403776 CAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 2403717 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || || || || || Sbjct 2403716 TTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 2403657 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| ||||||||| || || ||||| || | ||||| || Sbjct 2403656 TTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 2403597 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 2403596 CTTGCCGGTCA 2403586 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || || || || ||||| || | |||||||| | | ||| | ||||| Sbjct 2404004 CAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 2403945 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || || || || || Sbjct 2403944 TTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 2403885 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| |||||||||||| || ||||| || | ||||| || Sbjct 2403884 TTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2403825 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 2403824 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2403792 >seq77 Length=12846609 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| ||||| || | || || | ||||||| Sbjct 3756927 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 3756868 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || |||||||| || || ||||||||||| Sbjct 3756867 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCC 3756808 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 3756807 TGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 3756748 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 3756747 TTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756716 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| ||||| || | || || | ||||||| Sbjct 3757155 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 3757096 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || |||||||| || || ||||||||||| Sbjct 3757095 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCC 3757036 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 3757035 TGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 3756976 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | ||||| Sbjct 3756975 TTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3756944 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| |||||||| || || |||| ||||| || | || || | |||||| Sbjct 3757384 CAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 3757325 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || |||||||| || || ||||||||||| Sbjct 3757324 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTC 3757265 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 3757264 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 3757205 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || |||| || || | ||| | ||||| Sbjct 3757204 CTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3757172 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| ||||| || | | | ||||||| Sbjct 3756699 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGGGGGCCCATCT 3756640 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || |||||||| || || ||||||||||| Sbjct 3756639 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCC 3756580 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 3756579 TGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 3756520 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 3756519 TTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756488 >seq62 Length=55877296 Score = 96.9 bits (106), Expect = 8e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| ||||| || |||| |||| | ||| ||| | | | | | |||||||| ||| Sbjct 47108436 AGGTGCAGAGTTGACCCTTTCTGGATAATGTGATCAGAAAGACTGATGCCATCTTCCAGC 47108495 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || || ||||| || | || ||||| || | || ||||| || ||||||||| Sbjct 47108496 TGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGTGATGCCTTCTTTATCTTGGATC 47108555 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 || ||||||| | |||||||| || |||||| || | | ||| ||||||| Sbjct 47108556 TTAGCCTTCACATTCTTGATGGTGTTACTGGGTTCCACCTCCAGAGCGATAGTCTTGC 47108613 >seq10 Length=40277251 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 5019 CTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGT 5078 ||||| ||||| || || || | || ||| || ||||| ||||||||||||||||| Sbjct 31318058 CTTCAGTACCTGGCTCCTTATTCCGGCTGTTCCATGGGAGAGTATTTTAGAGATAATGGC 31317999 Query 5079 AAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAACGTATA 5128 ||||||||||| |||||||||||||| ||| ||||| |||| | ||| Sbjct 31317998 AAACATGCTTTGATCATCTACGATGACTTATCCAAACAGGTCAAAGGATA 31317949 Score = 93.3 bits (102), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 4453 TTAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATA 4512 ||||||| ||| || |||| || || ||||| || || || |||||||| || || Sbjct 31317609 TTAATCATAAA----GT-AATACCTGTCCGTCAGTGATGGAAATGACATTTGTTGGAATG 31317663 Query 4513 TAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572 |||||||| |||||||| ||||||||||| | || ||||| || || | || |||||| Sbjct 31317664 TAAGCAGACACATCACCAGCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCA 31317723 Query 4573 CCAAAA 4578 |||||| Sbjct 31317724 CCAAAA 31317729 >seq23819 Length=17017 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 ||||| || || || |||||||| || |||||||| | |||||||| ||||| || | | Sbjct 7203 TCAGGGTGTCCGAAGAATCAGAACAAGTGTTGATATAAAATAGGATCTCCTCCTCCAGCT 7144 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 |||||||||||| |||| |||| |||| ||| || Sbjct 7143 GGATCAAAAAAGGTAGTGTTAAGGTTTCGATCTGT 7109 >seq121 Length=26706505 Score = 84.2 bits (92), Expect = 5e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||||| || ||||||| || || || | ||| || |||||||| Sbjct 3317359 AGTCTCAACACAAGATGAAGAGTGGCGTCCTTGTGAGCGCCGTAGTCACACAAAGTTCGG 3317300 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | |||| ||||||||||| ||| || || || || |||| |||||| Sbjct 3317299 CCATCGTCCCGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGATCAGGAGGAACTCCTTCC 3317240 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || | ||||||| ||| || | | | || ||||||| ||| || || | ||| Sbjct 3317239 TTACCCTGGATCTCGGCCTTTACGTTTCCTACCGTATCTGAGGATTCAACTTCGACAGTG 3317180 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||| | ||||||| Sbjct 3317179 ATGGTCGTCCCCGTCA 3317164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192167262210386