Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq63 107 2e-18 seq1 95.1 1e-14 seq81 89.7 4e-13 >seq63 Length=14173813 Score = 107 bits (118), Expect = 2e-18 Identities = 332/508 (65%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| || || ||||| ||||| || ||||| | |||||||| | |||||| ||||| Sbjct 113864 TACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTACATAAAGTCAAA 113805 Query 4331 CGGATTAGTTGCGTTGTAATGTTTT-TCACACTTTAGAGCTACA--AGCAATCGGTCAGC 4387 ||||| | | || || || | | || | |||| || | | |||||| || Sbjct 113804 TGGATTTTCTACTCTGAAAACCTTGCTAAAACCT---AGCTCCAGCATAAGTCGGTCTGC 113748 Query 4388 TACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAG 4447 ||||| || ||||| || |||| | ||| || | ||||| | |||| || | Sbjct 113747 CACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTTCACGGGCAA 113688 Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTT 4507 || | | | || || || | || | ||| | | || || || | | | | Sbjct 113687 GGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCATTGATAATGATTTCCCTCACTCT 113628 Query 4508 ATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | | ||| ||||||| || | || | |||| | || ||||| ||||| || || Sbjct 113627 CTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAA 113568 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 || || ||||||||||| ||||| || ||||| || | || ||||| | || | || Sbjct 113567 GCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCACGATT 113508 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 || | ||| ||||| | ||||| || ||||||||||| || ||||| || | |||||| Sbjct 113507 CTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGTGGCAAA 113448 Query 4688 CGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 || || | || || | | ||| ||||||| |||||| || ||||| | Sbjct 113447 GGCCACAACCCGTTCTCCATAGGTAGC-CTCTTTGTCCCCAATCCAACGCAAAGCCCAAT 113389 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGT 4774 || || ||||| || || || ||||| Sbjct 113388 CTGCCTTCTTCTTTACACAAGGCATTGT 113361 >seq1 Length=9663177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | || | || || Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| || Sbjct 2450283 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 2450342 Query 4692 AC 4693 || Sbjct 2450343 AC 2450344 >seq81 Length=24260673 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 5368895 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 5368951 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 5368952 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 5369011 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 5369012 ATAAGTCAAC 5369021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || | ||||| || || |||||||| ||||| |||||||||||||| ||||| Sbjct 5341926 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTC 5341985 Query 4319 CATAAAATCAAACGGATT 4336 |||||||||||| ||||| Sbjct 5341986 CATAAAATCAAAGGGATT 5342003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426925630036727