Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq63 266 4e-66 seq268 123 3e-23 seq1 116 5e-21 seq81 105 9e-18 >seq63 Length=14173813 Score = 266 bits (294), Expect = 4e-66 Identities = 418/597 (70%), Gaps = 6/597 (1%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| || | Sbjct 113936 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATCCT 113877 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| ||||| || | ||||| || || ||||| || ||||||| ||| ||||| | Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 |||||| ||||||||||| || | | ||| || |||| |||| || || || Sbjct 113816 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATAAG 113757 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 || ||||| || || || |||||| ||||| | |||||| | || || || || Sbjct 113756 TCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTT 113697 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || || | |||||| | || || || || | ||| | |||| | || || Sbjct 113696 CACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCATTGATAATGATTTC 113637 Query 48092 TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATC 48151 | || | | |||| ||| || | || ||||| ||||| | || ||||| || Sbjct 113636 CCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTC 113577 Query 48152 ACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAG 48211 ||| || | || |||||||| ||||| | ||| || ||||||||||| || ||||| || Sbjct 113576 ACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 113517 Query 48212 TCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271 ||||| || |||| ||| ||||| | ||| ||||| ||||||||||| || ||||| || Sbjct 113516 GCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 113457 Query 48272 GGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTG 48328 | ||||| || || | ||||| || | || || |||| ||||| || Sbjct 113456 AGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAA 113397 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 |||||||| |||||||||||||||||||||||||| || || ||||| |||||||| Sbjct 113396 AGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGAAA 113340 >seq268 Length=8074579 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 364427 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 364486 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 364487 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 364546 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 364547 TTTCTTATACCAT 364559 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 380728 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 380787 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | || | ||||||| Sbjct 380788 TATGTTTCAATAGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 380847 Query 78519 ATATGCTGAGGTCTTTC 78535 ||||| || |||||||| Sbjct 380848 ATATGTTGTGGTCTTTC 380864 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | ||| Sbjct 373737 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 373796 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | ||| || ||||||| || Sbjct 373797 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 373856 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 373857 TCCAGGTAAATAGCAAATGCCCCAGGTCG 373885 >seq1 Length=9663177 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||| ||||| || ||||| || |||||||| ||| Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||| ||||| ||||||||||| || ||||| || || ||||| || Sbjct 2450283 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGC 2450341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 2449024 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 2449083 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 2449084 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2449143 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 2449144 CATAAAGTCAAATGGATT 2449161 >seq81 Length=24260673 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||||||||| || ||||| || || | ||| | Sbjct 5360704 CTTCATCTCTGCTGATGAGTTCATTGGAAAATGTGAGTCCAGGCATAAGACCTCTTTTCT 5360763 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||| ||||| || || |||||||| || ||||| || |||||||| || ||||| | Sbjct 5360764 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 5360823 Query 48283 C 48283 | Sbjct 5360824 C 5360824 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| | ||||||||| ||||| |||||| Sbjct 5372758 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 5372817 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 |||||||||||| || || ||||||| Sbjct 5372818 GTATTGGATTGGAAAGATGACAAATC 5372843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694461971048160