Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq63 269 4e-67 seq312 196 7e-45 seq268 127 3e-24 seq1 120 4e-22 seq81 113 6e-20 >seq63 Length=14173813 Score = 269 bits (298), Expect = 4e-67 Identities = 421/598 (70%), Gaps = 8/598 (1%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| ||||| |||| || | |||| ||| ||| | | |||||| ||||| || | Sbjct 113936 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATCCT 113877 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || |||||||| | ||||| || || ||||| || ||||||| ||| ||||| | Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460 |||||| ||||| ||||| || | ||| || |||| |||| || || || Sbjct 113816 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATAAG 113757 Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 || ||||| || || || ||||| ||||| | |||||| | || ||||| || Sbjct 113756 TCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTT 113697 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT-ATCG 46579 || || | |||||| | || || || || | || | |||| |||| | || Sbjct 113696 CACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCATT-GATAATGATTT 113638 Query 46580 ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAAT 46639 | ||| | | |||| ||| ||| | || ||||| ||||| | || ||||| | Sbjct 113637 CCCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGT 113578 Query 46640 CACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTA 46699 |||| || | ||| |||||||| ||||| | ||| || ||||||||||| |||||||| | Sbjct 113577 CACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 113518 Query 46700 GTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTA 46759 | ||||| || |||| ||| ||||| | ||| ||||| ||||||||||| || ||||| | Sbjct 113517 GGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCA 113458 Query 46760 CAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCACCTTT 46816 ||| || || || |||| | ||||| || | || || || | |||||| | Sbjct 113457 CAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCA 113398 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||||||||| ||||| |||||||||||||||||||| || || ||||| |||||||| Sbjct 113397 AAGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGAAA 113340 >seq312 Length=4428592 Score = 196 bits (216), Expect = 7e-45 Identities = 605/923 (66%), Gaps = 61/923 (7%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| ||||| |||| || |||| ||| ||| | | |||||| ||| ||| | Sbjct 260618 TTAGAAGTCAGCATCCAAGCTAAAAGAATTCTCTGTTGGACTTGACATCACTGTCATCCT 260677 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA-TATTTT 46399 || | ||||| | | || || || || ||||| || |||| || ||| | |||| | Sbjct 260678 CTGAGACCCACCTCCTCTCTTTTCAAAGAAGTTAGTCTTCCCTTGCAGTGAAAATATTCT 260737 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 | |||| ||| | ||||| || | || |||| ||| || | || | Sbjct 260738 TCTTAAAGTCAGATGGATTTTCGAC--------TCTTGCTAAAACCTCGCTCCCACATAA 260789 Query 46460 GTCTATCTGCAACGAATTCTATATA---CGTTTTCATCATTTCACAATTCATTCCTATGA 46516 ||| ||||| || ||||| ||||| | || | | ||| |||||||| || | || Sbjct 260790 GTCGGTCTGCCACAAATTCAATATAGTGCTTTATTAACATG---CAATTCATCCCAACGA 260846 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TT 46575 | || | || | ||||||| || ||||||||||| || | ||||||| |||| || Sbjct 260847 GATTCCCGGGCAAGGCCTCCGGGAGGAACTCTTGTTCTATCCTAACAGCATT-GATAATT 260905 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | ||| | ||| ||| ||| | || ||||| |||| | || ||| Sbjct 260906 ATTTCCTTCACTCTCAGCTCCGAGGGTTCATGGACCAGGTGTTTGGACATCAGGCAGGCA 260965 Query 46636 AAATCACA--ATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 || ||||| ||||| ||||||||||| ||||| ||| | | ||||||||||| |||| Sbjct 260966 AAGTCACAGTATGAA--CCTTCATCTCTGCTAATAAATACCTGGGAAAATGTGAGGCCAG 261023 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || |||||||| ||| | | | || | ||||||||| | || Sbjct 261024 GCAT----------TTCTTGAGCCAGAATGACGACACAGAAAAACCAGAAAAGGAGATCT 261073 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810 |||| ||||| || || || |||| | || || | | || || || | ||||| Sbjct 261074 CTTCCACAGCAGC-AAGGCCACAACCCGTTCCCCATTGGTAGCCTCTTTGTCCCCAATCC 261132 Query 46811 ACCTTTGA-GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 | | || |||||||| |||| ||||| |||||||||| || || || ||||| ||| Sbjct 261133 A-ATGCGAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATCGTGTCAATGGCATTGAAG 261191 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT---- 46925 ||||| ||| | || ||||| || | | || | | ||||| |||| Sbjct 261192 AGAAA------TTC--CCCT-TCTTTGGAATGTTTGTCGGTGAGGAGACTGCACATCGCA 261242 Query 46926 ----TTCTGA-ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 | |||| ||| ||||| || | || || || || || || ||||| | ||||| Sbjct 261243 TCCATGCTGAGATGTATGTTGTCCGTGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCT 261302 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 || ||||| || ||| | ||| || || ||| || ||||| ||||| |||||||| Sbjct 261303 GTGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 261362 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC 47100 || ||| | || |||| ||||| |||||||| | || | |||| | | Sbjct 261363 GCCGCAGAGAAAGCCAGAACATGGCATATAAAATA---GCCCTCAGGCTTCAGGGATTCC 261419 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 ||| || || || || | ||| || |||||||||||||| || || ||||| ||| Sbjct 261420 CAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCT 261479 Query 47161 TTTTTATACATATTCCATATATC 47183 || |||| ||| | ||| | ||| Sbjct 261480 TTCTTATCCATCTGCCAAAGATC 261502 >seq268 Length=8074579 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 364427 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 364486 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 364487 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 364546 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 364547 TTTCTTATACCAT 364559 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 380728 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 380787 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 380788 TATGTTTCAATAGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 380847 Query 77114 ATATGCTGAGGTCGTTCT 77131 ||||| || |||| |||| Sbjct 380848 ATATGTTGTGGTCTTTCT 380865 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 385496 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGATG 385555 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | || || |||| || ||| | || || || |||||||||| | Sbjct 385556 GCATAGTCAGGGTGCTTAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGT 385615 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| || || || | |||| ||||| || |||||||||| Sbjct 385616 TCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 385661 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 || || || || || || || || || || ||||||| ||||| || |||| |||||| Sbjct 369074 GCCAGGTCACAGCTAGCTTCCAAGGCTCCATAATAAACGGTTTCAAATATCTGCTTATTC 369133 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 || || ||||| |||| ||||||||||| | |||||||| |||||||| || Sbjct 369134 AGTAGCTGGGCTTCTGGACTCTCAAAAGGATATCTCATCAGAATAAAAGCATCTGCCAGA 369193 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || || || || || ||||| || | ||| | ||||| || Sbjct 369194 CCTTGTACCCCGATTCCAATGGGGCGATGGCGTTTATTTGA 369234 >seq1 Length=9663177 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| ||||| |||||||| || ||||| || ||| Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||| ||||| ||||||||||| || ||||| ||||| || || || Sbjct 2450283 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 2450342 Query 46774 ACAA 46777 |||| Sbjct 2450343 ACAA 2450346 >seq81 Length=24260673 Score = 113 bits (124), Expect = 6e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||||||||| |||||||| || || | || | Sbjct 5360704 CTTCATCTCTGCTGATGAGTTCATTGGAAAATGTGAGTCCAGGCATAAGACCTCTTTTCT 5360763 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 5360764 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 5360823 Query 46772 CGACAAGTCT 46781 | || | ||| Sbjct 5360824 CCACCACTCT 5360833 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 5372758 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 5372817 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 |||||||| ||||| || ||||||| Sbjct 5372818 GTATTGGATTGGAAAGATGACAAATC 5372843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712722132694080