Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq77 140 7e-28 seq48 123 6e-23 >seq77 Length=12846609 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 3757165 CCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 3757106 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 3757105 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCC 3757046 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || |||||| |||| | | |||| ||| || || || Sbjct 3757045 TTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 3756986 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||||||||||| |||||| Sbjct 3756985 GGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3756944 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 3756937 CCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 3756878 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 3756877 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCC 3756818 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 3756817 TTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 3756761 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 3756760 CAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756716 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || ||||| ||||| || ||||||||||| || | || | Sbjct 3756709 CCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGG 3756650 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 3756649 GGGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCC 3756590 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 3756589 TTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 3756533 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 3756532 CAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756488 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| ||||| || ||||||||||| || | | || | ||||||| Sbjct 3757383 AGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 3757324 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| ||||| | |||||||||||| | | ||| |||||||| || Sbjct 3757323 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCC 3757264 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 3757263 TGGATCTTCGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 3757207 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||||| |||||| Sbjct 3757206 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3757172 Score = 125 bits (138), Expect = 2e-23 Identities = 164/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 3756481 CCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 3756422 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || |||||| || ||||| | ||||||||||| | | ||| || Sbjct 3756421 GCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCC 3756362 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || |||||| | || | | |||| ||| ||| || || Sbjct 3756361 CTCCTTGTCCTGGATCTTCGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTC 3756305 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| || || | ||||||||||||| ||||||| Sbjct 3756304 CAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 3756259 >seq48 Length=2952444 Score = 123 bits (136), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| |||||||| |||||||||||||| | | ||| | |||||| Sbjct 2403547 AGGACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2403488 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| || || || ||| Sbjct 2403487 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 2403428 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | | || ||| ||| || || || || || Sbjct 2403427 TGGATCTTGGCCTTCACATTTTCGATGGTATC---ACTGGGCTCCACCTCCAGGGTGATG 2403371 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||||||||||| ||||||||| Sbjct 2403370 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 2403333 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || |||||||| || ||||||||||| | | ||| | |||||| Sbjct 2404003 AGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 2403944 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| || || || ||| Sbjct 2403943 TCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 2403884 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | |||| ||| ||| || || || || || Sbjct 2403883 TGGATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 2403827 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 2403826 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2403792 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || ||||| |||||||| |||||||||||||| | | ||| Sbjct 2404241 CCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 2404182 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || || || |||||||||||||| | | ||| || Sbjct 2404181 ACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCC 2404122 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 || || ||||| || || || ||| | || | | |||| ||| ||| || || Sbjct 2404121 CTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGCTCCACCTC 2404065 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 2404064 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2404020 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| |||||||||||||| | | ||| | |||||| Sbjct 2403775 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2403716 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| || || || ||| Sbjct 2403715 TCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 2403656 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | | || ||| ||| || || || || || Sbjct 2403655 TGGATCTTGGCCTTCACATTTTCGATGGTATC---ACTGGGCTCCACCTCCAGGGTGATG 2403599 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2403598 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 2403564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153468675886549