Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq14 156 6e-33 seq151 125 1e-23 >seq14 Length=22407316 Score = 156 bits (172), Expect = 6e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313 ||||||||||||| |||| ||| ||| ||||| || || ||||| || ||||| |||| Sbjct 20342012 TGGTCTGGAACAGCCGCTCATCATCCCACTCTGGGTGCTCCTGTTTAAGCACATCACACA 20341953 Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373 | ||||| ||||||| | ||| || ||||| |||||||| || ||||| ||||| || | Sbjct 20341952 CTCTGTTATGTTCCCGCAACCAAATTGTGGCATACATCATCAGACCAGGCACCAGCCCGA 20341893 Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 || | || || || || || | || | || ||| || || | ||| || |||||||| | Sbjct 20341892 AAACTTCCTGGCCCACGGCAAACCGTAGGTGTTCAGGAACATGGGGTGGGTAGATCATCT 20341833 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||||| |||||||| | ||| ||||||| || || ||||| Sbjct 20341832 CCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAAT 20341787 Score = 147 bits (162), Expect = 3e-30 Identities = 215/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | |||||| | || ||||| ||||| || || | |||| |||||| |||| | Sbjct 20343589 GAACACTGAACGCAGTAAAAGGACAGCCCTTCACATTATTGCAGATAAGAGACCGAATTG 20343530 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 20343529 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 20343470 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || |||||| || |||| || ||||| | ||| || || || |||| || | Sbjct 20343469 CAGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAAAAGGGTGCTCCCATTTCTA 20343410 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 || ||||||| |||||||| | ||||| |||||||| |||| || | | |||| Sbjct 20343409 CCATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCAGGATACA 20343350 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | || || ||||||||| | | ||||| || ||||| |||| Sbjct 20343349 GCTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTC 20343290 Query 8583 CTGT 8586 |||| Sbjct 20343289 CTGT 20343286 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 20340979 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 20340920 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 20340919 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 20340860 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 20340859 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 20340800 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 20340799 TTTCTTGCCTGAAAAATGAGAA 20340778 >seq151 Length=15485885 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || ||||| ||||| |||||||||||| | || | Sbjct 8741407 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTTGGCTTCCAGTACTCTGGAG 8741466 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 8741467 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 8741526 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| || || ||| |||| | | || | ||| | ||||| Sbjct 8741527 TCTCCCCAAAGATGGAGTTTGGGTGGCACTTCTCCAGAAGCAGCCCCGGGTAGAACTCCA 8741586 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| |||||| || || | | ||||| || |||||||| || |||| Sbjct 8741587 AGGCATCGATGTCTCCATACAGCTCTTCCAACTCGGCTGCAATCTCCTTCTCCCCTG 8741643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716663358893760