Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq77 145 2e-29 seq48 141 2e-28 seq102 100 7e-16 seq241 93.3 1e-13 >seq77 Length=12846609 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | ||||| || || |||||||| |||||||| || ||| Sbjct 3756719 CAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3756776 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 3756777 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAGC 3756836 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 3756837 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 3756896 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 3756897 TCCAGAAGGAGTCCACTCTGCACCTGGT 3756924 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 3756947 CAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 3757004 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 3757005 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAGC 3757064 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 3757065 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 3757124 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 3757125 TCCAGAAGGAGTCCACTCTGCACCTGGT 3757152 Score = 143 bits (158), Expect = 6e-29 Identities = 158/207 (76%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 3757175 CAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3757232 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 3757233 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAGC 3757292 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 3757293 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 3757352 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 3757353 TCCAGAAGGAGTCCACTCTGCA-CTTG 3757378 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | ||||| || || |||||||| |||||||| || ||| Sbjct 3756491 CAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3756548 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 3756549 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAGC 3756608 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || | || || ||| Sbjct 3756609 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCCCCCCCTATCTGACTACAACA 3756668 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 3756669 TCCAGAAGGAGTCCACTCTGCACCTGGT 3756696 >seq48 Length=2952444 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 2403795 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2403852 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || || || ||||| || || ||||| || ||||| || ||||||| Sbjct 2403853 ACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 2403912 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 2403913 AGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 2403972 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||||| || || |||||||| || || | || ||| Sbjct 2403973 TTCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGCCTGAGA 2404013 Score = 132 bits (146), Expect = 1e-25 Identities = 156/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 2404023 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2404080 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || || || ||||| || || ||||| || ||||| || ||||||| Sbjct 2404081 ACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 2404140 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 2404141 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGATTACAACA 2404200 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||| || || || || || ||| Sbjct 2404201 TCCAGAAAGAGTCGACTCTCCACCTGGTT 2404229 >seq102 Length=21916573 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || | || || || ||| | |||| ||| |||| || ||| Sbjct 2296061 CAGATTTTCGTGAAAACCCTTATGGGGAAGACTATCCCTCTCGTGGTTGAAACCTTGGAC 2296120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || |||||| |||| || |||||||| | ||| || ||||| Sbjct 2296121 ACGATAAGAAATGTAAAGGCCAAGATTTAGGATAAGGAAGGAATTCTTCCTGATCAGCAG 2296180 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| ||| | || || | |||||||| | ||| | | || || | || Sbjct 2296181 AGACTGATCTTGGCCAGCAAGCAATTGCAAGATGGACGTACTTTGTCTGACTACCATGTT 2296240 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || || |||| |||||||| Sbjct 2296241 CAAAAGGAGCCCACTCTTCAAATTGTGTTGAGACT 2296275 >seq241 Length=15830963 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 177920 GCTCCAAATTTTCGTGAAAACTCTCAC-AGGAAAAACGATCACCCTCGAGGTGGAAAGCT 177978 ||| || |||||||||||||| ||||| ||| || || ||| ||||||| || || Sbjct 6313980 GCTGCAGATTTTCGTGAAAACCCTCACGAGGGAAGACCGTCAGGATCGAGGTTAAACCCT 6314039 Query 177979 CAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACC 178038 |||| || || || || | || |||||| |||| || |||||||||||||| || | Sbjct 6314040 CAGATACAATAGAAAATCTAAAGGCCAAGATTGAGGAGAAGGAAGGAATCCCTCCTGAGC 6314099 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACA 178066 || | |||| ||||| || || ||||| Sbjct 6314100 AGGAGGGACTGATCTTTGCTGGCAAACA 6314127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203363844183886