Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq77 140 3e-28 seq48 109 5e-19 >seq77 Length=12846609 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| | || || Sbjct 3757152 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3757093 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || |||| | ||| ||||| | ||| | || ||||||||| | Sbjct 3757092 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3757033 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | |||||||| | ||||||||||| || || || ||| Sbjct 3757032 ATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3756973 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||| ||||||||| Sbjct 3756972 CCGGTCAGGGTCTTCACGAAGATCTGCATG 3756943 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| | || || Sbjct 3756924 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3756865 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || |||| | ||| ||||| | ||| | || ||||||||| | Sbjct 3756864 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3756805 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 3756804 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 3756745 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| ||||| ||||||||| Sbjct 3756744 CCTGTCAAGGTCTTCACGAAGATCTGCATG 3756715 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| | || || Sbjct 3757380 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3757321 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || |||| | ||| ||||| | ||| | || ||||||||| | Sbjct 3757320 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3757261 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 3757260 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 3757201 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||| ||||||||| Sbjct 3757200 CCGGTCAGGGTCTTCACGAAGATCTGCATG 3757171 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| | || || Sbjct 3756468 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3756409 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| | ||| ||||| | ||| | || |||||||||| | Sbjct 3756408 AGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3756349 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | ||||| || | ||||||||||| || || |||||| Sbjct 3756348 ATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTA 3756289 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 3756288 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3756260 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| ||||| || |||| | || | || || Sbjct 3756696 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGGGGGCCCATCTTCC 3756637 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || |||| | ||| ||||| | ||| | || ||||||||| | Sbjct 3756636 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3756577 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 3756576 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 3756517 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| ||||| ||||||||| Sbjct 3756516 CCTGTCAAGGTCTTCACGAAGATCTGCATG 3756487 >seq48 Length=2952444 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| || ||| ||||||||||| || || || || ||||| | || || Sbjct 2404000 ACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2403941 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || || || | ||| ||||| | ||| | || ||| || || | Sbjct 2403940 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 2403881 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||||||||| || || || || Sbjct 2403880 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2403821 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||| ||||||||| Sbjct 2403820 CCGGTCAGGGTCTTCACGAAGATCTGCATG 2403791 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| || || || ||| ||||| ||||| || || Sbjct 2404250 ACAGCCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATC 2404191 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || || || | || || ||||||||||| || || ||||| | ||| ||||| | Sbjct 2404190 AGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGG 2404131 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||| || || ||| || ||||| | ||||| || | ||| Sbjct 2404130 GGGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTC 2404071 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 2404070 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 2404019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || ||| ||||| ||||| || || || || ||||| | || || Sbjct 2403544 ACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2403485 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | ||| | || ||| || || | Sbjct 2403484 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 2403425 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | || || || | ||||||||||| || || || || Sbjct 2403424 ATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2403365 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| |||||||| || Sbjct 2403364 CCGGTCAGGGTCTTCACGAAGATCTGCATTTT 2403333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| || || || || ||||| | || || Sbjct 2403772 ACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2403713 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || || || | ||| ||||| | ||| | || ||| || || | Sbjct 2403712 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 2403653 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | || || || | ||||||||||| || || || || Sbjct 2403652 ATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2403593 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| || || ||||||||| Sbjct 2403592 CCGGTCAGGGTCTTCACAAAGATCTGCATG 2403563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462166354762800