Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq93 410 9e-110 seq59 354 6e-93 seq240 181 8e-41 seq133 156 3e-33 seq6 125 5e-24 >seq93 Length=6788731 Score = 410 bits (454), Expect = 9e-110 Identities = 424/548 (77%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 3976 TTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGA 4035 ||||| |||| || |||||||||||||||||| |||||||| ||||| || | |||| || Sbjct 253281 TTCTTTTCATGTAGTTCAAATTTGTACTTAATGCTTTTCTCCTCTTGGACGTCAGAAGGA 253340 Query 4036 ACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTG 4095 || | ||||| || | | ||| || ||||| || | ||||| |||||||||||| | Sbjct 253341 ACGCCTGGATGTTTTGGAAGAAGCTTATATTTTTCCAAATCAATTTCTGGAAAAAACAGG 253400 Query 4096 TCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTC 4155 |||| |||||| || ||||||||||| |||||||| | | | |||| | ||| | | Sbjct 253401 TCACTTTCAAATTCCTGCATGATCCTTGTCACAAA-AATCTGAGATGGGCTGGCTTGTCC 253459 Query 4156 ATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCT 4215 || ||||| ||||| |||||||| ||||| | | |||| || ||||| |||||||||| | Sbjct 253460 ATGGCTTCCTTATAAACAGAACTGCCTCC-ACTGTCCAAACTATGTCCACTTTATTTGTT 253518 Query 4216 AATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCT 4275 |||||| | || | |||||||||||| |||||||| | ||| || || | |||||||||| Sbjct 253519 AATTCTAGTTGCTAGGTAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCT 253578 Query 4276 CTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG-CCTTTTAAAGG 4334 | |||||| | ||||| | ||| | ||||| || | |||||||||| ||||||||||| Sbjct 253579 CCTTGTGGAGGTTCCTTGAATTCTCTACTGAGTACTAAATTAATTCTGTCCTTTTAAAGG 253638 Query 4335 CCG-GTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 || |||||||| ||||| |||||||| |||||| |||| |||||||| |||||||||| Sbjct 253639 TCGATTTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTT 253698 Query 4394 TATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTC 4453 || || ||| ||||| | || |||||||||| ||||| ||||| |||||| | ||| Sbjct 253699 TACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCCTGAGTA 253758 Query 4454 TTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCATGTTTTGAGCTACAGCAACAAT 4511 |||| ||| || || ||| ||||| || ||| |||| || | | | ||| | Sbjct 253759 GGTGCCAGTGCAGGT--CCCTGTTCTTGCCCATACCCGTGTTCTGGGACATGGTGACAGT 253816 Query 4512 GCAGTTTA 4519 |||||||| Sbjct 253817 GCAGTTTA 253824 >seq59 Length=9252037 Score = 354 bits (392), Expect = 6e-93 Identities = 430/581 (74%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||| ||||||||||||||||||||| |||| | ||| Sbjct 1369637 AAAACACTTTCACATTAATTGTTCTTTTCATATACTTCAAATTTGTACCTAATGCCTTTT 1369696 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 | || || |||| ||| |||||| ||| |||||| | |||||||||||| || | | Sbjct 1369697 TTCTCCTGGACATCAGAGGGAACACCTGGCTATTCTGGAAGAAGTTTGTATTTTTCCAAA 1369756 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCA--CAA-AC 4131 ||| |||| ||||||| || ||| ||||| || ||||||||||| ||| || | Sbjct 1369757 TCAGTTTCTAGAAAAAATATGCCACTCTCAAATTCCTGCATGATCCTTGTCCTGCAGGAT 1369816 Query 4132 AGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC 4191 | | |||||| || ||| | || ||||| ||| ||| || |||||||| | |||| Sbjct 1369817 AATCTAAGATGGCCTGGCTTGTCCACGGCTTCCTTAAACAGAG--CTACCTCCCACTATC 1369874 Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251 || | ||| || ||| ||||| || |||||| || || |||||||||| |||||||| Sbjct 1369875 CAAAACATAACTGCTTAATTTGTTATTTCTGGTTGCTCAATAAGTTTTAAGGCATCATCC 1369934 Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311 | ||| || | ||||||||||||| |||||||| ||| | ||||| | || ||||| Sbjct 1369935 AGACTTTTGTCAAAAAAATGAGCTCC-TGTGGAAGTTCCCTGAGTTCTCTACTTAGAACT 1369993 Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371 | |||||||||| | |||||||| | ||||||||| || | |||||||| ||||| || Sbjct 1369994 AAATTAATTCTGTCCTTTAAAGGTCAGTTCTTCTCTTGAGTGGAGAACCAGGTCTTCCTA 1370053 Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAA 4431 ||||||||||| ||| |||| ||| || ||| |||| | || |||||||||||||| Sbjct 1370054 CCCATAATCACCAAACTCTGCTTACCTTCTACTAAAGAGGCTGTGGTCATTCTTTGGAAG 1370113 Query 4432 TGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATG 4491 | || || |||||| | | ||||| |||| || || | ||||| || ||||| Sbjct 1370114 TACTTGAATTCATTCCTGACCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCCATATCCATG 1370173 Query 4492 TTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || | ||||| | ||||||| || | ||||||| Sbjct 1370174 TTCTGGGACACAGCGATGATGCAGTCGAGCGGACGAACCAT 1370214 >seq240 Length=2402814 Score = 181 bits (200), Expect = 8e-41 Identities = 487/739 (66%), Gaps = 7/739 (1%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGT 101591 || || |||||| | ||||||||| | || || || || ||| ||| ||| | || || Sbjct 1020445 TTTAATAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGCCTTC-AATCTGAAAGT 1020387 Query 101592 CATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651 | || || || ||||||||||| ||| ||| | | | | || | | || | Sbjct 1020386 CTTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTTGAAGGATTTTGAGCTTCAGGAAAG 1020327 Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711 | || || |||| | ||||||||| || | |||||||||| | || ||||| | Sbjct 1020326 GCCTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAAATGTGGG 1020267 Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771 ||||||| | ||| || | ||| || || ||| || |||| || ||||||||| Sbjct 1020266 CATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGT 1020207 Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 | || | || || ||||| || ||||| || |||| || | ||||| || | || | Sbjct 1020206 AGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCTCCCGACC 1020147 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGA 101890 | ||||| || ||||| |||| || | ||| || || || || | | || | Sbjct 1020146 ACTCGTACAGCTGGCAGGACAGCTCACCGTTCACC-ACGTAGAACTGGCAAAGGGCAGGG 1020088 Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950 || || || | || | | | ||| |||||| |||||||| | | || Sbjct 1020087 CAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAGGCACACATGATGACGATT 1020028 Query 101951 CTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010 || || ||||||| ||||| || || ||| ||| || | | ||||| |||||||| Sbjct 1020027 CTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGCTGGTCTACTCCTTCG 1019968 Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070 ||| |||||| | | | |||| ||||| || || ||||||||||||||||| || Sbjct 1019967 CCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCG 1019908 Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130 || || || || ||||||||| ||||| | || || || | || || || | Sbjct 1019907 TAAACCGGGCCTAGATCTCCT---GCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCT 1019851 Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190 | || ||| | || ||||| || | ||| || | || ||||| || || || Sbjct 1019850 CGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTG 1019791 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250 ||||| |||||||||||| || | | || | |||| || ||| || || | || || Sbjct 1019790 GATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGTTTGGTT 1019731 Query 102251 GTTAAAAGTGGAAATTCAT 102269 || | ||||||||||||| Sbjct 1019730 GTGAGCAGTGGAAATTCAT 1019712 >seq133 Length=5157461 Score = 156 bits (172), Expect = 3e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || ||||| |||||||| || | ||| ||||||||||| |||| || || Sbjct 3959232 ACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGCATCTTCTCCAGCCGGAAGGAG 3959291 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 | |||||| | ||| || | |||| || || |||||||| ||||| ||||| ||| Sbjct 3959292 TGTGGGCAGTGCTGAGGCTCCCGTCGCAGGACCAGGATCTCTTGCTGGATGGGGACGGAG 3959351 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||||||||| ||| || ||||| | ||| || ||||| || ||| || ||||| || Sbjct 3959352 TTCATGTGGTGGTCGACCTTCCCCTTAGCGTTGACACAGCCCGAGTGGCTGCACTTGGCC 3959411 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||||||||| || | || | || || ||||| Sbjct 3959412 TCCCAGATCACAGAGGGGTACCGCTCGGGGTCCTCGTTGCG 3959452 >seq6 Length=20809404 Score = 125 bits (138), Expect = 5e-24 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 11039912 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 11039971 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| |||||||||||| || Sbjct 11039972 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 11040020 Score = 116 bits (128), Expect = 3e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| || || | |||||| |||||||| |||||||||| ||||||||| Sbjct 11034676 TTATAAACAGAACTCCCCCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 11034735 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || || ||| |||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 11034736 TGCTCAATAACTTTTAAGGCATCATCCAGACTGTTGGCAAGAAAATGAGCTCCTTGTGG 11034794 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || ||||||| |||||||||||| ||||||| ||||| || ||||| Sbjct 11032396 AAGTTTATATTTTTCCAGATCAATTTCTGGAAAAAATGTGTCACTCTCAAATTCCTGCAT 11032455 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| | | |||||| || ||| | ||||||||| || | ||||| Sbjct 11032456 GATCCTTGTCACAAATAATCTAAGATGGCCTGGCTTGTCCATAGCTTCCTTTGAAACAGA 11032515 Query 4176 AC 4177 || Sbjct 11032516 AC 11032517 Score = 98.7 bits (108), Expect = 7e-16 Identities = 78/93 (84%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| |||||| ||||| ||||| |||||||||||||||||||||||||| | |||| Sbjct 11024739 AAAAAACATTT---TTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 11024795 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||| |||||| ||||||| Sbjct 11024796 TCCTCCTGGACATCAGAAGGAACACCTGGATAT 11024828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360032849282975