Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq179 394 1e-104 seq167 329 4e-85 seq2 266 4e-66 seq275 228 1e-54 seq33 158 1e-33 seq54 136 5e-27 seq10 113 5e-20 seq65 82.4 9e-11 >seq179 Length=3731984 Score = 394 bits (436), Expect = 1e-104 Identities = 389/503 (77%), Gaps = 0/503 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 1810065 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 1810006 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||||||||||||||||||| || ||||||||| Sbjct 1810005 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCGG 1809946 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || ||||||||||||| |||| || ||||||| ||| ||| | |||||| || Sbjct 1809945 CATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGACAGTGGCGTCGTCACTG 1809886 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || || |||||||||||| |||| ||| ||| ||||| || Sbjct 1809885 GGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCTGATGCGCCTTTGAGCCGTTCACG 1809826 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || || ||||| |||||||| ||||| |||||||| ||| || | ||||| | ||| Sbjct 1809825 TCACATTTCTCAAAGAGCATGAAGTTGGGCTCGAACCCGCCTCCTGTTCGGACATACTTG 1809766 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | || |||||| | |||| ||||| ||||| | || |||||||| |||||| Sbjct 1809765 AGGCAGTTCAGGATCTCCTCGTTCTTCGCGTTCTCCTGATACCCAAACTGGTTGCACGGG 1809706 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| ||||| | || ||||||||||||||||| |||| ||| ||| Sbjct 1809705 AAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTCATTCAGCTGGGTG 1809646 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || ||||||||||| | |||||||| ||||| || ||||| ||||||| ||| |||| Sbjct 1809645 TAGTCCCGGACCGTCGTGCCTCAGAGCGACGCCACATTCTCAATGAGCAGCACCTTGCCC 1809586 Query 83537 CGTAAGAAGCCTAAGCTCACAGG 83559 | | | |||| | |||||| || Sbjct 1809585 AGCAGGGAGCCCAGGCTCACCGG 1809563 >seq167 Length=4081818 Score = 329 bits (364), Expect = 4e-85 Identities = 355/469 (76%), Gaps = 2/469 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 2329552 AGCAGGGCTTCGATGTCAGGCTCGATGTCGACGGTCAGAAAGCGGCGGCTGTACCTGCGC 2329493 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || | || || | ||| || ||||||||| |||||||||| || ||||||||| Sbjct 2329492 ACAGGTGCACCATCTGGGCCCCCCGGGAACTTCTCCAAGTTCCAGGAGACATCGTTGCGG 2329433 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || ||||||||||||| |||| || ||||||| ||| ||| | | |||||| || Sbjct 2329432 CATACTGGAGACCAGGTGATGAACTCGGGGTCGGTCATGAGGGCAGTGGCGTCGTCCCTG 2329373 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || || |||||||||||||| || ||| || |||| || Sbjct 2329372 GGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTCTGAGCCGTCCACG 2329313 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||| ||||| ||||||| ||||| |||||||| ||| | || ||||| | ||| Sbjct 2329312 TCGCATTTCTCAAAGAGCACGAAGTTGGGCTCGAACCCGCCGTCTGGTCGGACATACTTG 2329253 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | | |||||| | |||| ||||| ||||| | || |||||||| |||||| Sbjct 2329252 AGGCAGTTTAGGATCTCCTCGTTCTTCGCGTTCTCCTGATACCCAAACTGGTTGCACGGG 2329193 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 | | ||||| ||||| ||||| | || |||||| |||||||||| |||||||| ||| Sbjct 2329192 GAACGCAGCACGACCAGGCCCCGGGGCCCGAGGCGCTGCTGCAGCTCATTCATCTGGGTG 2329133 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525 || |||||| |||| | |||| || ||||| |||||||| || ||| Sbjct 2329132 TAGTCCCGGCCCGTTGTGCCTC--AGCGACGCCACGTTCTCAGTGCGCA 2329086 >seq2 Length=26575922 Score = 266 bits (294), Expect = 4e-66 Identities = 261/337 (77%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 817441 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 817500 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||||||||||||||||||| || ||||||||| Sbjct 817501 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCGG 817560 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || ||||||||||||| |||| || ||||||| ||| ||| | | ||||||| || Sbjct 817561 CATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGTGTCGTCACTG 817620 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || || |||||||||||||| || ||| ||| ||||| || Sbjct 817621 GGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTTCACG 817680 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || || ||||| |||||||| ||||| |||||||| ||| || || ||||| | ||| Sbjct 817681 TCACATTTCTCAAAGAGCATGAAGTTGGGCTCGAACCCGCCTCCTGGTCGGACATACTTG 817740 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| | || |||||| | |||| ||||| |||| Sbjct 817741 AGGCAGTTCAGGATCTCCTCGTTCTTCGCGTTCTCCT 817777 Score = 181 bits (200), Expect = 1e-40 Identities = 165/208 (79%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| | || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 818054 CCTGATACCCAAACTGGTTGCACGGGAAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGC 818113 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||||||||| |||| ||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 818114 GCCGCTGCAGCTCATTCAGCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 818173 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | |||||| || || || |||| Sbjct 818174 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACCGGCTCCCCGCCGG 818233 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || ||||||||||| || Sbjct 818234 CCAGCGGGCGCGCAGAGAAGGCGTATAC 818261 >seq275 Length=1750225 Score = 228 bits (252), Expect = 1e-54 Identities = 333/469 (71%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| ||| | | |||| | ||||| |||||| ||||||| Sbjct 400328 AGCAGGGCTTCGATGTCAGGCTCGACGTCAATGGTCAGAAAGCGGCGGCTGTGCCTGCGC 400387 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||| || ||||||||| || Sbjct 400388 ACAGGCACACCATCCGGGCCCACCAGGAACGTC---------------ACGTCGTTGTGG 400432 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || ||||||| ||| || | | |||||| || Sbjct 400433 CACACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAAGGCAATGGCGTCGTCACT- 400491 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 | || | || ||||| || || |||||||||||| | || | ||| | | ||| || Sbjct 400492 -GGGCATGAAGAGCCTCGCGAAGAAAGGCGAAGAGCAGGTGCG-CCTCGTGCTGTTCACA 400549 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||| | |||| |||||||| || | |||||||| ||||| || || |||| | ||| Sbjct 400550 TCGTATGTCTCAAAGAGCATGAAACTGGGCTCGAACCCGTTGCCTGGTCGGATGAACTTG 400609 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | | || ||| | |||| |||||| ||| | || || |||||| | ||| || Sbjct 400610 AGGCAGTTTAGGACCTCCTCGTTCTTGGCGTTCTCCCGCTGCCCAAACTGGCTGCACCGG 400669 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || || | |||| | || || | |||||| |||||||||| |||||||| ||| Sbjct 400670 AAGCCGAG-TCAGCCAGGCACC-AGGCCGGAGGCGCTGCTGCAGCTCATTCATCTGCGTG 400727 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525 | ||||||||| | || ||||| ||||| || ||||| |||||| Sbjct 400728 CAGCCCCGGACCGCTGTGCCCCAGAGCGACGCCACATTCTCAGTGAGCA 400776 >seq33 Length=12690746 Score = 158 bits (174), Expect = 1e-33 Identities = 292/422 (69%), Gaps = 16/422 (4%) Strand=Plus/Minus Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163 ||||||||| ||| |||| |||||| || || |||||||||||||||||| || Sbjct 719799 GCTGTACCTCTGCATGGGCACGCCGTCCAAGCCTCCCGGGAACTTCTCGAAGTTCCAAGC 719740 Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223 ||||| |||||| | |||||| | || || ||| ||| ||| ||| || | Sbjct 719739 GACGTCCTTGCGG--------ATACCAGGAGACGAACTTGGGCTCGGTCATGAGGGTAGT 719688 Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283 | | || || |||| |||| ||||| || |||||||||||||| || || ||| | Sbjct 719687 GGCGACATCACTGGGCGTGAGCAGAGCCTCGCGAAGGAAGGCGAAGAGTGGGTGCGCCTT 719628 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 | || || || ||||||||||| |||||| | ||||| ||| |||| | | || | Sbjct 719627 GGTGCCATTCACGTCGCACTTCTCAAAGAGCTTGAAGTTGGGCGCGAACCTGCCATCA-G 719569 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAA 83403 | ||| ||| | | | |||||| | |||| |||||| ||||| || | || Sbjct 719568 TGGAACGGACTTGAAGCCCTTCGGGATCTCCACGTTCTTGGCGTTCTCCTGATGCACAAA 719509 Query 83404 CTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTC 83463 |||||| ||| ||| || |||| | ||| ||| || || | |||||||||||||| Sbjct 719508 CTGGTTGCACCAGAAGCCGAGCATGAACAGGGCCC-AG-GCCGTGTCGCCGCTGCAGCTC 719451 Query 83464 GTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAG-GGACGCTACGTTCTCGATGA 83522 | ||| ||||| | ||||||||| | |||| | | || || | |||||| ||| Sbjct 719450 AT---TCTAGGTGTAGT-CCGGACCGTTGTGCCTCGGTGACGAGGCCAGGTTCTCTATGG 719395 Query 83523 GC 83524 || Sbjct 719394 GC 719393 >seq54 Length=10386490 Score = 136 bits (150), Expect = 5e-27 Identities = 207/287 (72%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 875642 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCACGCCTGC 875584 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 875583 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAATACAACTGCA 875524 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 875523 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 875465 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| ||||| |||| ||| ||||| ||||| |||| ||||| ||| Sbjct 875464 GTGCAGCTGCTGTACCCCCGGGCCAAAAACGACCGCGTCTGGACGCTCGAGTTCGTGGGC 875405 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 875404 AAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 875360 >seq10 Length=18429489 Score = 113 bits (124), Expect = 5e-20 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110 |||| | |||||| || ||||| |||||| | ||| |||| | ||| |||||||||| Sbjct 2962073 GGGGACAACAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 2962014 Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170 | | |||| ||| | ||| | |||||| ||||||||| ||||||||||||| || Sbjct 2962013 CCGTGCACAGGCACACTGTCTGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 2961954 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCG-CTCACGAGCGTGCTCATGTC 83229 ||| ||||| ||||||| | | || || ||||| | | | |||| | || | Sbjct 2961953 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGGGGTAGTCATAAGAGCAGGGGCA--TT 2961896 Query 83230 GTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACC 83289 ||| || ||||| ||||| |||| | | |||| || ||||| |||||| ||| | Sbjct 2961895 GTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACAAGCGGGTGTGCCTGTGCCTC 2961836 Query 83290 GTTGACCT 83297 || |||| Sbjct 2961835 ATTCACCT 2961828 >seq65 Length=8603399 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || || ||||| || ||||| ||||| || ||||| | || || | || Sbjct 6531762 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTAGGA---AAGC 6531706 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||| || | ||| ||||| |||||| || | |||||||| || || | Sbjct 6531705 GGCATTGCAGCTCATTGAGCTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGTGAGGCCA 6531646 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | ||||||||||||| ||| ||| || || Sbjct 6531645 CATTCTCGATGAGCACTGCCCTGCCTCGGAA 6531615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606690933819000