Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq182 149 6e-31 seq150 118 1e-21 seq83363 116 4e-21 seq299 113 5e-20 seq180 87.8 2e-12 seq98 87.8 2e-12 seq584 86.0 6e-12 seq24 84.2 2e-11 seq260794 82.4 8e-11 >seq182 Length=3864254 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | |||||||| ||||||||| | || || || || Sbjct 2229398 AAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 2229457 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||||||| | || Sbjct 2229458 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCTGA 2229516 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| ||| ||||| |||||||| || | ||||| || ||| || Sbjct 2229517 CCAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCCGATTA 2229576 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || |||||||| || |||| ||||||| || Sbjct 2229577 CAACATCCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGTGG 2229627 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 2229629 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 2229688 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || |||||||| | ||||| Sbjct 2229689 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 2229747 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| ||| ||||| |||||||| || | ||||| || || ||||| Sbjct 2229748 GCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2229807 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || |||||||| || | || ||||||| ||| Sbjct 2229808 CATCCAGAAGGAGTCGACCCTGCATCTGGTCCTCCGTCTGAGGGGTGGC 2229856 >seq150 Length=4498840 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| |||| || || ||| Sbjct 34407 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 34348 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | ||||| ||||||||||| | || ||| Sbjct 34347 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGATCAG 34288 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | | |||||||||||| || || | ||||| || |||||||| Sbjct 34287 CAGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTACAAT 34228 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| |||| ||||| ||||| Sbjct 34227 ATTCAGAAGGAGTCCACCCTGCACTTAGTG 34198 >seq83363 Length=456 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | ||||| || |||||||| | || || |||||| | Sbjct 173 ATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCT 232 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||||| ||||| || || || || | || ||| Sbjct 233 GATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 292 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || |||||||| || || | || |||||| ||||||||| Sbjct 293 CAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAAC 352 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| | || || ||||| || Sbjct 353 ATCCAAAAGGAATCAACCCTCCATCTTGT 381 >seq299 Length=1488728 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 40720 AAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATT 40779 || ||||||||| | || || || ||| |||| | | ||| |||||| | || Sbjct 453298 AAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTCAAGGGGACGATC 453239 Query 40780 CTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTG 40839 | || ||||||||||||| | |||||||| | | |||| || || ||||||||| Sbjct 453238 CAAGAAAAAGAGGGCATCCTTCCAGACCAGCAGAGGTTGATCTTTGCTGGGAAACAGCTG 453179 Query 40840 GACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || | ||||||||| |||||||||||||||||||| |||| ||||| | || Sbjct 453178 GAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTC 453119 Query 40900 TTGCGCTTGAGGGGCGG 40916 ||||||| ||||| || Sbjct 453118 CTGCGCTTAAGGGGAGG 453102 >seq180 Length=3735678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||| | ||||||||| |||| || || |||| Sbjct 1580496 ATGCAGATTTTTGTGAAGACCCCGACGGGCCAGACCATCACCCTCGAGGTTGAGTCCACT 1580437 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| ||||| |||| |||| | | |||||| Sbjct 1580436 GACACTGATAAGAATGTCAAAGCTAAAATCTAAGACAAGGAGGTCATCTCACCTGACCAG 1580377 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | | |||| ||||||||||| || | ||||| || |||||| | Sbjct 1580376 CAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACGAT 1580317 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | ||||| ||| |||| |||| |||| | || || | |||||| Sbjct 1580316 GTTCAGAAAGAGTCCACCTTGCACTCAGTGCTTCGTCTGGGAGGCGGC 1580269 >seq98 Length=6767347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 4449101 AATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 4449160 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||||| || || | || ||||||||||||||| | ||||| Sbjct 4449161 TGACACCATCGAAAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCA 4449220 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| | | |||| || || ||||||||||| || Sbjct 4449221 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA 4449256 >seq584 Length=118070 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || | ||||| ||||||||| | || || | ||| Sbjct 49195 ATGCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTTGAGGTTAAGCCCAGT 49136 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 49135 GACATCATTGAGAATGTCAAAGTTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 49076 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTACAA 40868 || | || || | | | ||||||||||||| || | | ||| | || | |||||||| Sbjct 49075 CAGCATCTGATTTTTGTGAGCAAACAGCTGGAGGATGGCCACACTC-CATCAGACTACAA 49017 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| ||| |||| |||| Sbjct 49016 TATTCAGAATGAGTCCACCTTGCA 48993 >seq24 Length=14023012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG-TGCAAACGCTCAA 40769 || |||||||| ||| ||||| |||| || || || |||| | || || | ||| Sbjct 9383911 CTGACGGGCAAGACCCTCACCCTCGAGGTTGAGCCCTGTGACACCACTGAGAATG-TCAG 9383853 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | ||||| ||||||||||||||||| | |||||||| || || | | |||||| Sbjct 9383852 AGCTAAAATCAAAGACAAAGAGGGCATCCCACCTGACCAGCAGCGTCTGAGTTTCGCGGG 9383793 Query 40830 CAAACAGCTGGACGACGAGCGCACCC--TCAACGACTACAACATCCAGAAG 40878 | |||||||||| || | ||||||| ||| |||||||| || ||| || Sbjct 9383792 CGAACAGCTGGATGAGGGCCGCACCCCGTCA--GACTACAATATTCAGGAG 9383744 >seq260794 Length=213 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/142 (73%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 40757 TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816 || ||||| | |||| || || | |||||||| || |||||| | || ||||| |||| Sbjct 190 TGAAAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAGCAGCGAC 132 Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876 | |||| || |||||||| || || || | ||||| | ||| ||||||||||||| Sbjct 131 TGATCTTTGCTGGCAAACAACTCGAAGATGGACGCACTTTGTCCGATTACAACATCCAGA 72 Query 40877 AGGAGGCCACGCTGCATCTAGT 40898 | ||| | || || || || || Sbjct 71 AAGAGTCTACTCTCCACCTGGT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513437024586000