Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq240 154 1e-32 >seq240 Length=2402814 Score = 154 bits (170), Expect = 1e-32 Identities = 426/650 (66%), Gaps = 5/650 (1%) Strand=Plus/Minus Query 97010 GGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAA 97069 |||||||||| || |||| ||||||| | | || | ||||||||||||| |||| Sbjct 1020332 GGAAAGGCCTTGGTTCTCGCTGAAGCTGCATTTTCAGCGGCTCAATGTGATTCATGTAAA 1020273 Query 97070 TGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGA 97129 |||| |||||||| |||||||| | ||| || || || | | |||| || || | Sbjct 1020272 TGTGGGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCTGTGATGTGTGCAA 1020213 Query 97130 TCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAG 97189 |||| | || | || || ||||| || ||||| || |||| || || ||||| || Sbjct 1020212 TCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCATGCCCAGGCCCATGTCTC 1020153 Query 97190 CTGATCTTTGATATAACTGACAGGAAAGCTTTCC-ATCACACACATAAAACTGACTCAAT 97248 | || | | || | ||| ||||| |||| || |||| ||| || ||||| | | Sbjct 1020152 CCGACCACTCGTACAGCTGGCAGGACAGCTCACCGTTCAC-CACGTAGAACTGGCAAAGG 1020094 Query 97249 ACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAAC 97308 || | ||||| || | ||| | | | |||| |||||| |||||||| | Sbjct 1020093 GCAGGGCAGGGTGGGAGGGCCGTGAGCGCGAGATCTTTTGGATTCCAGGCACACATGATG 1020034 Query 97309 ATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACG 97368 | |||| || | ||||| || | || || | | | | || || | || || || Sbjct 1020033 ACGATTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGCTGGTCTACT 1019974 Query 97369 CCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGG 97428 ||||| || ||||| | | | ||| ||||| || |||||||||||||| || Sbjct 1019973 CCTTCGCCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGA 1019914 Query 97429 AATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAA 97488 || || ||||| || || || |||| || |||| |||| || || | || || Sbjct 1019913 AAGCCGTAAACCGGGCCTAGATCTC---CTGCTCTGGTGGAGAATCCCAGGCTGTCCAAG 1019857 Query 97489 TAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTG 97548 || | || ||| | || ||||| || | ||| || | | ||||| || | Sbjct 1019856 AAGTCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 1019797 Query 97549 TCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTC 97608 | || ||||| |||||||||||| |||| | |||| |||| || ||| || || | Sbjct 1019796 TTTGTGGATCCCTTGATAAACCACAGCAATCCCTCCAAAACATCTTCCCAGAAAACACGT 1019737 Query 97609 TTAGTTGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCAT 97658 || ||||| | || ||||| || | | | |||||| | | |||||| Sbjct 1019736 TTGGTTGTGAGCAGTGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAT 1019687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345614441158250