Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq103000 113 7e-20 seq83363 111 2e-19 seq150 98.7 1e-15 >seq103000 Length=415 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| || ||||| || || | ||| |||| || Sbjct 403 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAAACAATTACACTCGAGGTTGAGGCCTCC 344 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| |||||||| || ||||| ||||| Sbjct 343 GACACCATTGAAAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGATCAG 284 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| |||| || ||||| ||||| || || || ||| | || || | ||||| ||| Sbjct 283 CAACGGCTAATCTTTGCCGGAAAGCAGTTGGAAGATGGACGCACTCTTTCTGATTACAAT 224 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | || | ||| | ||| | ||||| || || Sbjct 223 ATCCAGAAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGAGGAGGAAT 174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || ||||| || ||| | || | || || Sbjct 176 AATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACAATCACTCTTGAAGTCGAGGCCTC 117 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||||||||||| || ||||| || ||||| ||||| Sbjct 116 AGACACAATCGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCA 57 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGA 124693 || | ||||||||||| || || ||| |||| || Sbjct 56 GCAGCGACTTATTTTTGCCGGCAAGCAACTAGAAGA 21 >seq83363 Length=456 Score = 111 bits (122), Expect = 2e-19 Identities = 138/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||||||||| || || ||||| || ||||||||||| Sbjct 4 TGATACCATTGAGAATGTGAAAGCGAAAATTCAGGACAAGGAAGGAATTCCACCTGATCA 63 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | |||||||| |||||||| ||| | || ||| | || ||| | |||||||| Sbjct 64 ACAGCGTCTTATTTTCGCAGGAAAGCAACTTGAAGATGGGCGTACACTCTCCGATTATAA 123 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 |||||||| || ||||| | || | || | ||| | ||||| || || ||| || Sbjct 124 CATTCAAAAGGAGTCAACCCTTCACCTTGTGCTCCGTCTTCGAGGAGGCATGCAAATTTT 183 Query 124777 CATAAAAA 124784 | |||||| Sbjct 184 CGTAAAAA 191 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| || | || || || || || ||| | || | ||||| | Sbjct 173 ATGCAAATTTTCGTAAAAACCTTGACGGGGAAGACCATCACTTTGGAAGTGGAAGCCTCT 232 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | || |||||||||||| || ||||| || ||||| ||||| Sbjct 233 GATACAATCGAGAATGTGAAGGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 292 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| |||||||| | || ||| | || || | || || || Sbjct 293 CAGCGTCTCATCTTTGCCGGAAAACAGCTTGAAGATGGACGTACCCTCTCTGACTACAAC 352 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||| | ||| | ||| | ||| | ||||| || || Sbjct 353 ATCCAAAAGGAATCAACCCTCCATCTTGTTCTCCGTCTCCGAGGAGGAAT 402 >seq150 Length=4498840 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| |||| | | | Sbjct 34407 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 34348 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||| || || || || ||||||||||| Sbjct 34347 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGATCAG 34288 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||||| || ||||| |||||||| | || || | ||| || ||| Sbjct 34287 CAGTGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCCGCACTCTGTCAGACTACAAT 34228 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| || || || || |||| || || Sbjct 34227 ATTCAGAAGGAGTCCACCCTGCACTTAGT 34199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752842830480000