Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicugna_20pacos_20[refseq_20GCF_5F000164845.2_202013-03-13] 276,725 sequences; 2,172,207,521 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq150 131 1e-25 seq182 107 2e-18 seq180 104 2e-17 seq260794 102 7e-17 seq83363 100 2e-16 seq584 98.7 9e-16 seq103970 95.1 1e-14 seq103000 86.0 5e-12 seq312 84.2 2e-11 >seq150 Length=4498840 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | || ||||| || ||||| ||||| || || |||||| |||||| Sbjct 34198 CACTAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGAGTGCGGCCATCCTC 34257 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || | | || |||| ||||||||| || || ||||||||||||||| Sbjct 34258 TAGCTGTTTGCCCACAAAAATCAGACACTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 34317 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||| ||||||| ||| | || || Sbjct 34318 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 34377 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 34378 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 34407 >seq182 Length=3864254 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| | |||||| ||| || ||||| || || Sbjct 2229825 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2229766 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| | |||||| || ||||| ||||| ||||| || || || || Sbjct 2229765 GCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2229706 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||| ||||| | ||| | || ||||||||||| || Sbjct 2229705 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2229646 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 2229645 TTCACGAAGATCTGCAT 2229629 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||||||| | |||||| ||| || ||||| || || Sbjct 2229597 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2229538 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| | |||||| || || || ||||| ||||| || || || || Sbjct 2229537 GCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2229478 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||| ||||| | ||| | || ||||| |||| || Sbjct 2229477 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 2229418 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 2229417 TTCACGAAGATCTGCAT 2229401 >seq180 Length=3735678 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118534 AGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCT 118593 |||| | || |||||||| |||| | ||| || || |||||| |||||| |||| Sbjct 1580292 AGTGCAAGGTGGACTCTTTCTGAACATCGTAGTCTGACAGAGTGCGGCCATCCTCCAGCT 1580351 Query 118594 GTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTT 118653 |||| || | | | || ||| ||||||| || || | ||| ||||||||||| |||| Sbjct 1580352 GTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGAGATGACCTCCTTGTCTTAGATTT 1580411 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | ||| || | | | ||||| ||| ||| ||||||| ||| | || | ||| | Sbjct 1580412 TAGCTTTGACATTCTTATCAGTGTCAGTGGACTCAACCTCGAGGGTGATGGTCTGGCCCG 1580471 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 || | || || |||||||||||||| Sbjct 1580472 TCGGGGTCTTCACAAAAATCTGCAT 1580496 >seq260794 Length=213 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||| || | |||| ||||| ||||||||||| || |||||||||||| | Sbjct 32 CCACCACGTAGTCGGAGAACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 91 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| ||||| ||||| ||||| |||| || ||||||||||| || || Sbjct 92 AAAGTGCGTCCATCTTCGAGTTGTTTGCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGG 151 Query 118632 ATGCCCTCCTTGTC 118645 || || || ||||| Sbjct 152 ATTCCTTCTTTGTC 165 >seq83363 Length=456 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || ||||| |||||||| || | || || ||| || | Sbjct 380 CAAGATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGTCCATCTTCAA 321 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||||||||| || ||||||||||||||||||| || || || || ||||||||| || Sbjct 320 GCTGTTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAA 261 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | |||| || || | | || || || | || | || || | Sbjct 260 TTTTCGCCTTCACATTCTCGATTGTATCAGAGGCTTCCACTTCCAAAGTGATGGTCTTCC 201 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | |||| |||||||| ||||| |||||| || Sbjct 200 CCGTCAAGGTTTTTACGAAAATTTGCATGCCT 169 >seq584 Length=118070 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCAT--AGTGCGCGTATCC 118586 ||||||||| | || ||||| || ||||| ||||| || | || |||| | |||| Sbjct 48986 CACCAAGTGCAAGGTGGACTCATTCTGAATATTGTAGTC--TGATGGAGTGTGGCCATCC 49043 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || |||||||| | | | || ||| ||||||| || || || ||||||||||||||| Sbjct 49044 TCCAGCTGTTTGCTCACAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 49103 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| ||| || | || | | |||| || || ||||| | ||| | || Sbjct 49104 TGGATTTTAACTTTGACATTCTCAATGATGTCACTGGGCTTAACCTCAAGGGTGATGGTC 49163 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| |||| || || ||||| |||||||| Sbjct 49164 TTGCCTATCAGGGTCTTCACAAAGATCTGCAT 49195 >seq103970 Length=412 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||||||| || ||| || |||||| Sbjct 178 CACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGAGTTCGGCCATCCTC 119 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || ||||| ||| |||| |||||||||||||| ||||| || || ||||| || Sbjct 118 CAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTG 59 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGA 118695 ||| || || || | |||| |||||| | | ||| ||||||| Sbjct 58 AATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCAACCTCGA 12 >seq103000 Length=415 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || || || || || || | || || ||||||||||| || || || || |||||| Sbjct 21 TCTTCTAGTTGCTTGCCGGCAAAAATAAGTCGCTGCTGATCTGGTGGGATTCCTTCCTTG 80 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| |||||| ||| || | |||| ||||| | | |||||| || | || | Sbjct 81 TCTTGAATTTTGGCTTTCACATTCTCGATTGTGTCTGAGGCCTCGACTTCAAGAGTGATT 140 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || |||||||| || ||||| |||||||| Sbjct 141 GTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 175 >seq312 Length=1320911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/168 (71%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||| | | ||||| |||||||| || | | || ||||||||||| || || || Sbjct 1167212 CAGAGTGTCCCTGTCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGCGG 1167271 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||||||| |||| ||| || | || |||||| || ||| || Sbjct 1167272 GATGCCCTCCTTGTCTTGGGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAAC 1167331 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||| | | ||||| ||||| || || ||||| |||||||| Sbjct 1167332 CT-GAGGGTGATGGCCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1167378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432367269693700